Re: libjs-jquery-datatables-extensions: pandoc needs vfs_fonts.js

Hi Steffen, On Mon, Aug 24, 2020 at 04:17:37AM +0200, Steffen Möller wrote: > @Andreas, > > good news: I made quite some inroads on why pigx-rnaseq does not work. > But that is for another email. > > My current hurdle is that vfs_fonts.js is missed by pandoc: > > pandoc: >

RFS: rampler

Hi, I've added autopkgtests to rampler. Please review and sponsor. https://salsa.debian.org/med-team/rampler Regards, Pranav ᐧ

Re: [benjamin.redeli...@gmail.com: Bug#968739: igv will not run]

Hi, Le 21/08/2020 à 12:44, Andreas Tille a écrit : > Hi Pierre, > > On Fri, Aug 21, 2020 at 11:32:47AM +0200, Pierre Gruet wrote: >>> I injected the latest upstream version into Git. It does not include so >>> many binary jar's any more but I think its trying to download these >>> instead. I

Re: Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?

Hi Rebecca, On Sun, Aug 23, 2020 at 11:30:19PM +0100, Rebecca N. Palmer wrote: > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=950430 > > pandas 1.0 has been in experimental for 6+ months, because it breaks some of > its reverse dependencies: > > In testing: > #950924 python-feather-format

Re: [benjamin.redeli...@gmail.com: Bug#968739: igv will not run]

Hi Pierre, On Mon, Aug 24, 2020 at 12:08:28PM +0200, Pierre Gruet wrote: > Contrarily to what I wrote a few days ago, I do not think we are ready > to remove all included jars in igv. > For instance we would have to package libgoby-java, I have just made > some packaging effort on its new

Re: RFS: damapper and dascrubber

Hi, On Mon, Aug 24, 2020 at 02:02:37AM +0100, Shayan Doust wrote: > Nevermind, I've stupidly just realised that damapper hasn't even made it > past NEW queue. That explains - whoops! > > I wouldn't mind re-uploading this after it's been accepted. Seems Shruti is simply ahead of time! ;-) So

[RFS] centrifuge

gbp clone --pristine-tar https://salsa.debian.org/med-team/centrifuge OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and Regards Nilesh

merge request opened Re: libjs-jquery-datatables-extensions: pandoc needs vfs_fonts.js

Hi Andreas, On 24.08.20 15:16, Steffen Möller wrote: > On 24.08.20 11:08, Andreas Tille wrote: >> Hi Steffen, >> >> On Mon, Aug 24, 2020 at 04:17:37AM +0200, Steffen Möller wrote: >>> @Andreas, >>> >>> good news: I made quite some inroads on why pigx-rnaseq does not work. >>> But that is for

Re: [RFS] centrifuge

allowed On 24.08.20 14:55, Nilesh Patra wrote: > gbp clone --pristine-tar https://salsa.debian.org/med-team/centrifuge > > > OR > > Grant DM access: PGP key fingerprint: > 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 > > Thanks and Regards > Nilesh

Re: libjs-jquery-datatables-extensions: pandoc needs vfs_fonts.js

On 24.08.20 11:08, Andreas Tille wrote: > Hi Steffen, > > On Mon, Aug 24, 2020 at 04:17:37AM +0200, Steffen Möller wrote: >> @Andreas, >> >> good news: I made quite some inroads on why pigx-rnaseq does not work. >> But that is for another email. >> >> My current hurdle is that vfs_fonts.js is

Re: [COVID-19 Hackathon] Bazel build system pending NEW

Hi Mo, Sorry about the slow reply, I've been a bit buried with emails and I'm not answering them as well as I would like. :( On Wed, Aug 19, 2020 at 12:40 AM Mo Zhou wrote: > Hi Olek, > > What a good news! Your hardword is much appreciated. > Thanks! I'm really looking forward to this making

pigx-rnaseq Re: merge request opened Re: libjs-jquery-datatables-extensions: pandoc needs vfs_fonts.js

Hi all, pigx-rnaseq runs a set of RNAseq tools within snakemake and then prepares reports with pandoc that look neat since the tables are all jquery-javascripted dynamic. Just, when pandoc expected the .js/.css files in a location that is not matching reality, then the whole process comes to an

Re: VIP

On 08/07/2020 18:01, Tony Travis wrote: On 08/07/2020 14:56, Michael Crusoe wrote: [...] Perhaps try the author's vip2 container? https://hub.docker.com/r/yang4li/vip2 Though I can find no source for either container, so it is a bit risky. Hi, Michael. OK, I've pulled the vip2 container

Re: [benjamin.redeli...@gmail.com: Bug#968739: igv will not run]

I created a "Java" tab on our spreadsheet. Would of course be great if that sees some momentum. Took the freedom to also add Cytoscape. And if I get this right, then also nextflow qualifies, which because of "capsule" seems kind of stuck. Best, Steffen On 24.08.20 21:58, Pierre Gruet wrote: >

Re: VIP

Hi Tony, On 25.08.20 01:09, Tony Travis wrote: > On 08/07/2020 18:01, Tony Travis wrote: >> On 08/07/2020 14:56, Michael Crusoe wrote: >>> [...] >>> Perhaps try the author's vip2 container? >>> https://hub.docker.com/r/yang4li/vip2 Though I can find no source >>> for either container, so it is a

Re: [benjamin.redeli...@gmail.com: Bug#968739: igv will not run]

On Tue, Aug 25, 2020 at 12:12:04AM +0200, Steffen Möller wrote: > I created a "Java" tab on our spreadsheet. Would of course be great if > that sees some momentum. Took the freedom to also add Cytoscape. And if > I get this right, then also nextflow qualifies, which because of > "capsule" seems

Re: [benjamin.redeli...@gmail.com: Bug#968739: igv will not run]

Hi Andreas, Le 24/08/2020 à 12:39, Andreas Tille a écrit : > Hi Pierre, > > On Mon, Aug 24, 2020 at 12:08:28PM +0200, Pierre Gruet wrote: >> Contrarily to what I wrote a few days ago, I do not think we are ready >> to remove all included jars in igv. >> For instance we would have to package