Re: Anybody up for Python3 port of pbgenomicconsensus? [j...@inutil.org: Re: pbgenomicconsensus: Python2 removal in sid/bullseye]

2020-09-01 Thread Andreas Tille
Hi Antoni, On Tue, Sep 01, 2020 at 06:05:41AM +, Antoni Villalonga wrote: > I've looked at that package some months ago (no progress done). > > At 'pbgenomicconsensus' d/changelog there is this TODO comment: > "TODO: unanimity to get python3-consensuscore2" > > At 'unanimity' d/changelog

Re: Anybody up for Python3 port of pbgenomicconsensus? [j...@inutil.org: Re: pbgenomicconsensus: Python2 removal in sid/bullseye]

2020-09-01 Thread Antoni Villalonga
Hi Andreas, I've looked at that package some months ago (no progress done). At 'pbgenomicconsensus' d/changelog there is this TODO comment: "TODO: unanimity to get python3-consensuscore2" At 'unanimity' d/changelog there is also a TODO comment claiming build problems with latest

Re: Short Introduction

2020-09-01 Thread Andrei Rozanski
Hi Andreas, Thanks for the welcome! On 8/31/20 11:08 PM, Andreas Tille wrote: Hi Andrei, thanks a lot for your interest in Debian Med (again - since I also said so in private mail). On Mon, Aug 31, 2020 at 09:15:43PM +0200, Andrei Rozanski wrote: I am new to the project and I would like

Re: Sponsored upload for shasta

2020-09-01 Thread Andreas Tille
Hi Shayan, sorry for beeing slower than usual with sponsering. I slowly recover to "normal operation" after DebConf. ;-) On Sat, Aug 29, 2020 at 05:27:10PM +0100, Shayan Doust wrote: > I believe Shasta[1] is ready for a sponsored upload. Please let me know > if anything needs altering. I was

Re: networkx 2.5 Re: Falcon -> misc updates

2020-09-01 Thread Steffen Möller
Hi Andreas, The whole falcon heavily depended on Python2. And the nim code did no compile. This was addressed. No idea if the error we now see results from the Python migration or if this is something else. Did the 2.1.x version ever before get to the point that tests were run? I admit that I

Re: [RFS] python-spectra

2020-09-01 Thread Andreas Tille
On Tue, Sep 01, 2020 at 06:32:35PM +0530, Nilesh Patra wrote: > dcut dm --uid npatra...@gmail.com --allow python-spectra Done. :-) -- http://fam-tille.de

[RFS] python-spectra

2020-09-01 Thread Nilesh Patra
gbp clone --pristine-tar https://salsa.debian.org/med-team/python-spectra OR dcut dm --uid npatra...@gmail.com --allow python-spectra Thanks and Regards Nilesh

Re: RFS: pbdagcon

2020-09-01 Thread Andreas Tille
Hi Pranav, On Sat, Aug 29, 2020 at 07:50:53AM +0530, Pranav Ballaney wrote: > I've added autopkgtests to pbdagcon. Please review and sponsor. > https://salsa.debian.org/med-team/pbdagcon Hmmm, I wonder whether this had build in a chroot at your side. For me it did not and I was not even able to

Re: networkx 2.5 Re: Falcon -> misc updates

2020-09-01 Thread Andreas Tille
Hi Steffen, I finally found the time to check falcon and was running routine-update first. I also tried to simplify dh_auto_test. However, I think the code that is executed should be perfectly the same as before. Unfortunately I get: ... if (self._strict and

how shall we propose to add refs to Debian package in upstream's README?

2020-09-01 Thread Steffen Möller
Hello, The friendly upstream to nanomath was so kind to point to our package on https://github.com/wdecoster/nanomath/ The (very short) history of it is that in one of our video chats it came up that we should use install instructions to point to our packages and thus promote our work. I found

Re: [COVID-19 Hackathon] Bazel build system pending NEW

2020-09-01 Thread Anton Gladky
Hi, > eigen: sometimes TF relies on new features that debian's libeigen3-dev >does not provide. In that case we have to use an embedded >tarball again. The new 3.3.8 release seems to be scheduled on 7th of september [1]. If it has features that you need, please just wait a couple

Re: Short Introduction

2020-09-01 Thread Andreas Tille
Hi Andrei, you wrote in private mail that you are not sure what package to choose. But MoM is always about open questions and answers. ;-) So I try to clarify here. On Tue, Sep 01, 2020 at 09:24:47AM +0200, Andrei Rozanski wrote: > > Regarding machine learning we are in the process of

Re: Short Introduction

2020-09-01 Thread Andrei Rozanski
Hi Andreas, Ok. Will do. On 9/1/20 9:13 PM, Andreas Tille wrote: Hi Andrei, you wrote in private mail that you are not sure what package to choose. But MoM is always about open questions and answers. ;-) So I try to clarify here. On Tue, Sep 01, 2020 at 09:24:47AM +0200, Andrei Rozanski

Re: Short Introduction

2020-09-01 Thread Andrei Rozanski
Hi Andreas, I am not bored about wikis but maybe I will accept your help since when trying to create wiki account I get: ``` Account creation failed: Automatic account creation disabled to stop spammers signing up. Please contact w...@debian.org and describe what you want to do in the

[RFS] igv 2.6.3

2020-09-01 Thread Pierre Gruet
Hi, I have worked on the packaging of igv 2.6.3+dfsg, which is in https://salsa.debian.org/med-team/igv This igv packaging still relies on its embedded jars. I have solved build issues related to gradle, another one linked to the current version of htsjdk (solves Grave bug on igv), and had to