Hi Andrei,
On Thu, Sep 03, 2020 at 02:49:41PM +0200, Andrei Rozanski wrote:
>
> I have done only a few changes. Is it possible to give me permissions to
> push the changes?
>
>
> ```
>
> remote: You are not allowed to write to this project's wiki.
>
> fatal: unable to access
>
Hello,
We are closing in on the workflows. What is kind of missing are the
mostly invariant inputs like the genomes of pathogens and very much so
the reference genomes of the human, mouse, rat, worm, fly, you name
them.
Other than a few years ago, hard drives are now big enough to
Hi Andreas,
On 9/3/20 8:18 AM, Andreas Tille wrote:
Hi Andrei,
On Wed, Sep 02, 2020 at 05:53:06PM +0200, Andrei Rozanski wrote:
Thanks for the help.
You are welcome.
I will check it.
Thanks.
Also, if needed, I could try to help migrating other pages.
Ok, thanks.
I do not think that
I looked at datasets.datalad.org. I could well imagine to use your
technology for other (larger) databases like Pfam or UniProt or PDB. For
cute little genomes my initial reaction was that I felt overwhelmed.
Your pointer will certainly help to define what we want. Many thanks!
On 03.09.20 18:09,
The name "datalad" (https://www.thesaurus.com/browse/lad) I definitely like.
I suggest to collect more input/use cases over the weekend and then see
how this goes. My immediate thought is that we describe our alternatives
and try them all on a machine that we share.
On 03.09.20 21:53, Yaroslav
Hi Steffen,
On Thu, Sep 03, 2020 at 05:16:18PM +0200, Steffen Möller wrote:
> Hello,
>
> We are closing in on the workflows. What is kind of missing are the
> mostly invariant inputs like the genomes of pathogens and very much so
> the reference genomes of the human, mouse, rat, worm, fly,
You might like to listen to debconf20 talk on DataLad ;-)
At some point I have started even to establish some kind of dh-datalad
helper so that .deb package would contain a datalad dataset
(git/git-annex repo), and would just `get` data files upon
installation... So -- yes, they would not be
https://salsa.debian.org/med-team/nanostat
Please kindly give it a spin. PyTorch etc is more important, no need to
stress it as a "no-more-running-Sprint"-thingy, we shall add it once it
is accepted, anyway.
Best,
Steffen
Hi Andreas,
On 9/3/20 4:07 PM, Andreas Tille wrote:
Hi Andrei,
On Thu, Sep 03, 2020 at 02:49:41PM +0200, Andrei Rozanski wrote:
I have done only a few changes. Is it possible to give me permissions to
push the changes?
```
remote: You are not allowed to write to this project's wiki.
On Thu, 03 Sep 2020, Steffen Möller wrote:
> I looked at datasets.datalad.org. I could well imagine to use your
> technology for other (larger) databases like Pfam or UniProt or PDB. For
> cute little genomes my initial reaction was that I felt overwhelmed.
> Your pointer will certainly help to
Hi Steffen,
I am new to Debian Med :)
Maybe could be easier to keep a registry of links, md5sum, taxonId,
database, version, etc. Then, when needed one can fetch the genomes on the
fly and check md5 using scripts that parse the registry. The genomes are
not huge anyways (unless somebody wants
Hi AndreiR,
On 03.09.20 19:47, Andrei Rozanski wrote:
> I am new to Debian Med :)
> Maybe could be easier to keep a registry of links, md5sum, taxonId,
> database, version, etc. Then, when needed one can fetch the genomes on
> the fly and check md5 using scripts that parse the registry. The
>
On 03.09.20 23:22, Yaroslav Halchenko wrote:
> On Thu, 03 Sep 2020, Steffen Möller wrote:
>
>> The name "datalad" (https://www.thesaurus.com/browse/lad) I definitely like.
> ...
I also liked the alternative association as an abbreviation of
"ladder". Maybe we should stress that a bit more.
On Thu, 03 Sep 2020, Steffen Möller wrote:
> The name "datalad" (https://www.thesaurus.com/browse/lad) I definitely like.
;-) The history goes: it was called datagit, but naive Yarik decided
to asks FSF for a permission... so we had to come up with a new name, I
flew into Germany, we drank
On Fri, 04 Sep 2020, Steffen Möller wrote:
> * sharing data between colleagues - can you have two different versions
> at the same time?
sure, similar to git... well -- it is git ;) so multiple versions
across collaborators, multiple versions on your own box etc -- all
possible. When you
On Thu, Sep 03, 2020 at 08:30:54PM +0200, Steffen Möller wrote:
> I looked at datasets.datalad.org.
I'd strongly recommend the very entertaining talk from DebConf
On Thu, 03 Sep 2020, Andreas Tille wrote:
> On Thu, Sep 03, 2020 at 08:30:54PM +0200, Steffen M�ller wrote:
> > I looked at datasets.datalad.org.
> I'd strongly recommend the very entertaining talk from DebConf
>
>
Hi Andrei,
On Wed, Sep 02, 2020 at 05:53:06PM +0200, Andrei Rozanski wrote:
> Thanks for the help.
You are welcome.
> I will check it.
Thanks.
> Also, if needed, I could try to help migrating other pages.
I do not think that anything will become structurally better if pages
will be
Hi Steffen,
On Tue, Sep 01, 2020 at 09:06:02PM +0200, Steffen Möller wrote:
> The friendly upstream to nanomath was so kind to point to our package on
>
> https://github.com/wdecoster/nanomath/
>
> The (very short) history of it is that in one of our video chats it came
> up that we should use
Hello,
On 2020-09-03 10:46, Andreas Tille wrote:
> Thanks a lot for this effort. I suggest we are using the official Debian
> Logo and not any Debian Med one for the following reasons:
>
> 1. There is no such thing like a Debian Med logo we have decided
> upon (despite we are using some
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