Re: libmaus2 update attempt 2.0.766

2020-11-18 Thread Étienne Mollier
Good day, I think my changes are ready for upload of libmaus2 2.0.766. The main change, in addition to the new upstream version, is the support for libsecrecy encrypted files; I almost forgot to add it before upload, since German added a check for libsecrecy support in configure.ac. :) Changes

Help to finalise libjloda-java needed

2020-11-18 Thread Andreas Tille
Hi Pierre (and others) I tried to update libjloda-java but the build fails with ... compile: [javac] Compiling 360 source files to /build/libjloda-java-2.0/antbuild/modules/jloda [javac] error: the unnamed module reads package org.xml.sax.helpers from both java.xml and xml.apis

Re: libmaus2 update attempt 2.0.766

2020-11-18 Thread Andreas Tille
Hi Étienne, On Wed, Nov 18, 2020 at 10:31:38AM +0100, Étienne Mollier wrote: > Good day, > > I think my changes are ready for upload of libmaus2 2.0.766. I took the freedom to grant you upload permissions for libmaus2 and biobambam2. Please let me know if you want an additional review. Thanks

Re: Project idea: port GKL to non-x86

2020-11-18 Thread Michael R. Crusoe
On Wed, 18 Nov 2020 at 10:32, Andreas Tille wrote: > Hi Michael, > > On Wed, Nov 18, 2020 at 12:00:29AM +0100, Michael Crusoe wrote: > > With https://salsa.debian.org/java-team/gkl/-/merge_requests/3 I am > able to > > build a GKL package that runs on non-amd64 (though probably at a huge > speed

Re: PDBx dictionary in Debian [Was: Re: Bug#974973: ITP: libcifpp -- A library for creating and manipulating mmCIF and PDB files containing macro molecular structure information]

2020-11-18 Thread Maarten L. Hekkelman
Op 17-11-2020 om 22:49 schreef Aaron M. Ucko: I've read the specs for /var/ in the Debian Policy. That's why I came up with /var/cache, it seems to match my requirements exactly. Sure, but nothing (besides dpkg) is supposed to modify files packages ship. (Configuration files under /etc are a

Re: Project idea: port GKL to non-x86

2020-11-18 Thread Andreas Tille
Hi Michael, On Wed, Nov 18, 2020 at 12:00:29AM +0100, Michael Crusoe wrote: > With https://salsa.debian.org/java-team/gkl/-/merge_requests/3 I am able to > build a GKL package that runs on non-amd64 (though probably at a huge speed > sacrifice) > > Using the resulting libgkl-java package and >

[RFS] mssstest

2020-11-18 Thread Nilesh Patra
dcut dm --uid npatra...@gmail.com --allow mssstest

Re: Help to finalise libjloda-java needed

2020-11-18 Thread Pierre Gruet
Hi again, Le 18/11/2020 à 15:59, Pierre Gruet a écrit : > Hi Andreas, > > > Le 18/11/2020 à 11:09, Andreas Tille a écrit : >> Hi Pierre (and others) >> >> I tried to update libjloda-java but the build fails with >> >> ... >> compile: >> [javac] Compiling 360 source files to >>

Re: [RFS] mssstest

2020-11-18 Thread Andreas Tille
Hi Nilesh, I confirm the website is throwing 404. :-( You might like to contact upstream - here is the last contact https://lists.debian.org/debian-med/2016/01/msg00084.html May be if its not online even more the interest in keeping it non-free is even less? Kind regards Andreas.

Re: Project idea: port GKL to non-x86

2020-11-18 Thread Steffen Möller
On 18.11.20 10:35, Michael R. Crusoe wrote: > > > On Wed, 18 Nov 2020 at 10:32, Andreas Tille > wrote: > > Hi Michael, > > On Wed, Nov 18, 2020 at 12:00:29AM +0100, Michael Crusoe wrote: > > With https://salsa.debian.org/java-team/gkl/-/merge_requests/3 >

done Re: [RFS] mssstest

2020-11-18 Thread Steffen Möller
Thanks! On 18.11.20 13:35, Nilesh Patra wrote: > dcut dm --uid npatra...@gmail.com > --allow  mssstest

Re: [RFS] libcifpp

2020-11-18 Thread Maarten L. Hekkelman
The package in salsa is now updated to include all suggested changes, including a debconf to ask for permission to enable the cron task. regards, -maarten Op 17-11-2020 om 20:25 schreef Maarten L. Hekkelman: Just pushed libcifpp into salsa. Libcifpp is a library to read, write and manipulate

Re: Help to finalise libjloda-java needed

2020-11-18 Thread Andreas Tille
Hi Pierre, On Wed, Nov 18, 2020 at 05:58:32PM +0100, Pierre Gruet wrote: > Good news: this is now fixed! > I have explicitly listed the necessary jars and added two missing > dependencies. Now the package builds. My changes have been pushed to Salsa. Cool. Thanks a lot, just uploaded. Kind

Re: [RFS] mssstest

2020-11-18 Thread Andreas Tille
On Wed, Nov 18, 2020 at 06:05:36PM +0530, Nilesh Patra wrote: > dcut dm --uid npatra...@gmail.com --allow mssstest BTW, when uploading such non-free software we should probably re-ping upstream for a free license. Kind regards Andreas. -- http://fam-tille.de

Re: [RFS] mssstest

2020-11-18 Thread Nilesh Patra
On Wed, 18 Nov 2020 at 18:35, Andreas Tille wrote: > On Wed, Nov 18, 2020 at 06:05:36PM +0530, Nilesh Patra wrote: > > dcut dm --uid npatra...@gmail.com --allow mssstest > > BTW, when uploading such non-free software we should probably > re-ping upstream for a free license. > Argh, I did not

Re: Help to finalise libjloda-java needed

2020-11-18 Thread Pierre Gruet
Hi Andreas, Le 18/11/2020 à 11:09, Andreas Tille a écrit : > Hi Pierre (and others) > > I tried to update libjloda-java but the build fails with > > ... > compile: > [javac] Compiling 360 source files to > /build/libjloda-java-2.0/antbuild/modules/jloda > [javac] error: the unnamed