Re: htscodec has new upstream location

2021-05-25 Thread John Marshall
Steffen Möller wrote: > htscodecs is now distributed next to samtools [...] > > I needed this update to compile 1.12 of htslib. which again is required > to compile bcftools 1.12. If you are making htslib depend on your libhtscodecs package then you need to configure htslib to use it via

Re: htscodec has new upstream location

2021-05-25 Thread Steffen Möller
Hi John, Am 25.05.21 um 15:17 schrieb John Marshall: > Steffen Möller wrote: >> htscodecs is now distributed next to samtools > [...] >> I needed this update to compile 1.12 of htslib. which again is required >> to compile bcftools 1.12. > If you are making htslib depend on your libhtscodecs

Re: vcflib does not install scripts - missing bgziptabix

2021-05-25 Thread Steffen Möller
Dear Pjotr, Am 25.05.21 um 19:18 schrieb Pjotr Prins: > I am looking at > > https://packages.debian.org/sid/amd64/libvcflib-tools/filelist > > and the R scripts are there. I think it is strange that many tools get > installed in /usr/lib/vcflib/bin/ though. Is this policy? The man > pages cover

Re: vcflib does not install scripts - missing bgziptabix

2021-05-25 Thread Pjotr Prins
Dear Steffen, I am looking at https://packages.debian.org/sid/amd64/libvcflib-tools/filelist and the R scripts are there. I think it is strange that many tools get installed in /usr/lib/vcflib/bin/ though. Is this policy? The man pages cover them all. wdyt? Pj. On Sun, May 23, 2021 at

Re: vcflib does not install scripts - missing bgziptabix

2021-05-25 Thread Pjotr Prins
Isn't namespace pollution something that comes up when you have a conflict? What is the chance of vcfallelicprimitives getting into a conflict? It would have to be another VCF toolkit ;) On Tue, May 25, 2021 at 07:41:46PM +0200, Steffen Möller wrote: > Dear Pjotr, > > Am 25.05.21 um 19:18

Re: ont-fast5-api (Was: libvbz-hdf-plugin (Was: CuteSV))

2021-05-25 Thread Nilesh Patra
Hi Andreas, On 5/24/21 2:34 AM, Andreas Tille wrote: > Hi Nilesh, > > On Sun, May 23, 2021 at 03:07:09PM +0530, Nilesh Patra wrote: >>> now and I've also uploaded to new. I admit I forgot for what >>> final target I was working on this lib. :-( >> >> This was the final target:

Re: htscodec has new upstream location

2021-05-25 Thread Steffen Möller
Am 25.05.21 um 15:17 schrieb John Marshall: > Steffen Möller wrote: >> htscodecs is now distributed next to samtools > [...] >> I needed this update to compile 1.12 of htslib. which again is required >> to compile bcftools 1.12. > If you are making htslib depend on your libhtscodecs package then