Bug#983239: libbio-db-ncbihelper-perl: (autopkg)test failures when network is available

2021-02-21 Thread Aaron M. Ucko
Étienne Mollier writes: > I have been looking in the issue below in the package > libbio-db-ncbihelper-perl. If I understood correctly, the main > point of the package is to rely on resources made available on > the Internet. I'm not sure I've been personally involved with this package, but

Bug#983239: libbio-db-ncbihelper-perl: (autopkg)test failures when network is available

2021-02-21 Thread gregor herrmann
On Sun, 21 Feb 2021 22:23:20 +0100, Étienne Mollier wrote: > As the purpose of the package is to fetch resources on the web, > I did something better described by the following commit[1]. > > [1] >

Processed: Re: libbio-db-ncbihelper-perl: (autopkg)test failures when network is available

2021-02-21 Thread Debian Bug Tracking System
Processing control commands: > tag -1 upstream Bug #983239 [src:libbio-db-ncbihelper-perl] libbio-db-ncbihelper-perl: (autopkg)test failures when network is available Added tag(s) upstream. > forwarded -1 https://github.com/bioperl/Bio-DB-NCBIHelper/issues/6 Bug #983239

Bug#983239: libbio-db-ncbihelper-perl: (autopkg)test failures when network is available

2021-02-21 Thread Étienne Mollier
Control: tag -1 upstream Control: forwarded -1 https://github.com/bioperl/Bio-DB-NCBIHelper/issues/6 Hi Aaron, I have been looking in the issue below in the package libbio-db-ncbihelper-perl. If I understood correctly, the main point of the package is to rely on resources made available on the

access to ThunderX ARM64 machine for those who want it

2021-02-21 Thread Steffen Möller
Hello, A Debian-friendly individual close to me offers access to his ThunderX machine to those who need it to develop Debian in some way. Access would be bare metal, though we could have different images to remotely boot from. Please contact me if you have any interest and I put you in touch.

Re: Autopkgtest for prottest

2021-02-21 Thread Andreas Tille
Hi Tássia, On Sun, Feb 21, 2021 at 06:07:26AM -0800, Tassia Camoes Araujo wrote: > > thanks for having a look into prottest autopkgtest. Your research into > > the docs helped to write some sensible test. I took the freedom to > > enhance it a bit. > > > Great, thanks! You are welcome. > >

Re: Autopkgtest for prottest

2021-02-21 Thread Tassia Camoes Araujo
Hi Andreas, On 2021-02-21 05:51, Andreas Tille wrote: > Hi Tássia, > > thanks for having a look into prottest autopkgtest. Your research into > the docs helped to write some sensible test. I took the freedom to > enhance it a bit. > Great, thanks! > Now the test is passing. However, I'm

Re: Autopkgtest for prottest

2021-02-21 Thread Pierre Gruet
Hi Tássia and Andreas, Le 21/02/2021 à 11:51, Andreas Tille a écrit : Hi Tássia, [...] Moreover I realised that there seems to be another issue: $ runXProtTestHPC Error: Could not find or load main class es.uvigo.darwin.xprottest.XProtTestApp Caused by: java.lang.NoClassDefFoundError:

Bug#983239: libbio-db-ncbihelper-perl: (autopkg)test failures when network is available

2021-02-21 Thread gregor herrmann
Source: libbio-db-ncbihelper-perl Version: 1.7.6-2 Severity: serious Justification: autopkgtest is relevant, network access is a policy violation -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 As seen on ci.d.n:

Autopkgtest for prottest

2021-02-21 Thread Andreas Tille
Hi Tássia, thanks for having a look into prottest autopkgtest. Your research into the docs helped to write some sensible test. I took the freedom to enhance it a bit. 1. The Debian Med team provides a wrapper script /usr/bin/prottest which saves the user the typing of `java -jar ...`.

Third day of online sprint (Was: Second day of online sprint ...)

2021-02-21 Thread Andreas Tille
Hi, I'm happy to confirm that at the third day of our sprint more people joined. Most possibly it is due to the weekend since people did not took vacation. I admit I'm honestly wondering how we might turn an online sprint to the same importance as a real life sprint. I mean, if there would be