guix-based installation of pigx-rnaseq - works

Hello, sudo apt-get install guix guix install pigx-rnaseq indeed installs the pigx-rnaseq library with its R dependencies. It installs it all in /gnu, which is somewhat inconvenient, as in "my root partition complained", and it takes painstakingly long, but it works.  The system finds STAR and

Re: Summarising Debian Med sprint online (Was: Third day of online sprint ...)

Hi, Andreas: thanks for organising this sprint, and thanks a lot for your nice report. Much appreciated. On Tue, Feb 23, 2021 at 03:33:42PM +0100, Andreas Tille wrote: > Hi Debian Med sprinters and those who are interested in some summary > > > * My expectation to see those people who are

Re: review+help for loguru would be nice

Am 23.02.21 um 04:42 schrieb Aaron M. Ucko: > Steffen Möller writes: > >> tests/test_exceptions_formatting.py > AFAICT, this test deliberately raises and catches exceptions, to confirm > that backtraces come out as expected, but runs into discrepancies > because they wind up containing absolute

Re: [RFS] libbio-db-embl-perl 1.7.4-4

Hi Nilesh, Nilesh Patra, on 2021-02-23 23:35:43 +0530: > On Tue, 23 Feb 2021 at 23:30, Étienne Mollier > wrote: > > > Changes are available > > below[1] for review and upload. > > > > Granted you upload rights, upload when you feel like doing so Thanks, I'll wait for dak's confirmation and

Re: [RFS] libbio-db-embl-perl 1.7.4-4

On Tue, 23 Feb 2021 at 23:30, Étienne Mollier wrote: > Changes are available > below[1] for review and upload. > Granted you upload rights, upload when you feel like doing so

[RFS] libbio-db-embl-perl 1.7.4-4

Hi Michael et al. I worked on libbio-db-embl-perl/1.7.4-4 to disable tests which require Internet, in the spirit of the discussion around 983239, in order to address 978316 (no typo this time). I'm not very happy with this move, but its failure to run properly triggered a transition of

Re: Help with autopkgtest for Seqsero and python-loompy

Hi, On Tue, 23 Feb 2021 at 22:25, Shruti Sridhar wrote: > Hi, > > I was trying to write autopkgtests for Seqsero and python-loompy. I have > been facing some errors. Could someone please have a look and let me know > what I can do : > > 1. Seqsero : I

Help with autopkgtest for Seqsero and python-loompy

Hi, I was trying to write autopkgtests for Seqsero and python-loompy. I have been facing some errors. Could someone please have a look and let me know what I can do : 1. Seqsero : I added the test data and the path to that in the example file but on

Summarising Debian Med sprint online (Was: Third day of online sprint ...)

Hi Debian Med sprinters and those who are interested in some summary at first thanks to all who joined the sprint. My personal impression was: * I had the perfect sprint feeling since I took vacation as always and worked from before 8:00 than after 22:00 local time with only few