Re: Broadinstitute catch - elegant way to disable tests requiring online access?

2021-07-28 Thread Steffen Möller
On 28.07.21 14:27, Nilesh Patra wrote: Hi Steffen, On 28/07/21 01:06 PM, Steffen Möller wrote: Hi Nilesh, The import of pristine-tar has worked after removing .gitattributes, but then the git lfs references were still in the tarball and the upstream branch. pristine-tar could be

Re: Broadinstitute catch - elegant way to disable tests requiring online access?

2021-07-28 Thread Nilesh Patra
Hi Steffen, On 28/07/21 01:06 PM, Steffen Möller wrote: > Hi Nilesh, > > > The import of pristine-tar has worked after removing .gitattributes, but > > > then the git lfs references were still in the tarball and the > > > upstream branch. pristine-tar could be pushed, but then the other > >

Re: ArrayExpressHTS ran into removed fastx-toolkit

2021-07-28 Thread Steffen Möller
On 28.07.21 06:30, Andreas Tille wrote: Hi, On Wed, Jul 28, 2021 at 01:13:38PM +0900, Charles Plessy wrote: I had a quick lookKind regards Andreas. (git grep) at the source code of ArrayExpressHTS and although it has an option to indicate the path to fasta_formatter, it appears

Re: Broadinstitute catch - elegant way to disable tests requiring online access?

2021-07-28 Thread Steffen Möller
Hi Nilesh, On 27.07.21 23:53, Nilesh Patra wrote: On 28 July 2021 3:00:08 am IST, Nilesh Patra wrote: Hi Steffen, On Tue, 27 Jul 2021 at 23:05, Steffen Möller wrote: Hi Nilesh, Thank you tons for thinking along. It took me a bit but. Too long. The answer is that git does not lose the