Re: Bioconductor API Bump to 3.13

2021-08-04 Thread Andreas Tille
Hi Steffen, On Wed, Aug 04, 2021 at 11:32:13AM +0200, Steffen Möller wrote: > Hello, > > Our distro currently holds > > $ apt-cache show r-bioc-biocgenerics| grep ^Provides > Provides: r-api-bioc-3.12 > > but about all of BioConductor now needs 3.13. The new > r-bioc-biocgenerics package

Re: Autopkgtests for bamkit and ea-utils

2021-08-04 Thread Nilesh Patra
On 8/4/21 11:49 PM, Shruti Sridhar wrote: > Hello! > > I have written autopkgtests for bamkit[1] The python3-pysam should be in Depends field of d/control, it is not a test-only dependency And aw crap, this missing dependency will affect user experience :( I guess I'll push your changes also

Autopkgtests for bamkit and ea-utils

2021-08-04 Thread Shruti Sridhar
Hello! I have written autopkgtests for bamkit[1] and ea-utils[2]. Kindly review, Thank you! Regards, Shruti [1] https://salsa.debian.org/med-team/bamkit [2] https://salsa.debian.org/med-team/ea-utils ᐧ

Bioconductor API Bump to 3.13

2021-08-04 Thread Steffen Möller
Hello, Our distro currently holds $ apt-cache show r-bioc-biocgenerics| grep ^Provides Provides: r-api-bioc-3.12 but about all of BioConductor now needs 3.13. The new r-bioc-biocgenerics package providing 3.13 can be installed without problems, but the then missing 3.12 of that API means that