[Advent bug squashing] Bug#1001349: marked as done (python-anndata: autopkgtest fail with pandas 1.3: missing openpyxl)

2021-12-10 Thread Andreas Tille
That was an easy one Package: python3-anndata Version: 0.7.5+ds-3 Severity: serious Tags: patch pandas.read_excel() now defaults to using openpyxl only, not openpyxl-or-xlrd: https://pandas.pydata.org/pandas-docs/version/1.3.4/whatsnew/v1.2.0.html Please update your build and test

[Advent bug squashing] Bug#1001020: marked as done (python-anndata: FTBFS with sklearn 1.0.1-1: ModuleNotFoundError: No module named 'sklearn.utils.testing')

2021-12-10 Thread Andreas Tille
This seems to be fixed Date: Fri, 03 Dec 2021 00:55:42 +0530 From: Nilesh Patra To: Debian Bug Tracking System Subject: python-anndata: FTBFS with sklearn 1.0.1-1: ModuleNotFoundError: No module named 'sklearn.utils.testing' Source: python-anndata Version: 0.7.5+ds-3 Severity: serious Dear

Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with

2021-12-10 Thread Andreas Tille
Am Fri, Dec 10, 2021 at 11:57:49AM +0100 schrieb Steffen Möller: > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1001436 > > for r-bioc-txdb.hsapiens.ucsc.hg19.knowngene and when I wanted to inject > it found that it is already existing at > >

Re: Any help to get pydicom build welcome

2021-12-10 Thread Mathieu Malaterre
On Fri, Dec 10, 2021 at 2:40 PM Andreas Tille wrote: > > Hi Mathieu, > > Am Fri, Dec 10, 2021 at 02:31:20PM +0100 schrieb Mathieu Malaterre: > > On Fri, Dec 10, 2021 at 12:22 PM Étienne Mollier > > wrote: > > [...] > > > My impression by looking at it to unroll is that something seems > > >

Re: Any help to get pydicom build welcome

2021-12-10 Thread Andreas Tille
Hi Mathieu, Am Fri, Dec 10, 2021 at 02:31:20PM +0100 schrieb Mathieu Malaterre: > On Fri, Dec 10, 2021 at 12:22 PM Étienne Mollier > wrote: > [...] > > My impression by looking at it to unroll is that something seems > > caught in a recursive loop. > > The bug is upstream. One cannot do: > >

Re: Any help to get pydicom build welcome

2021-12-10 Thread Mathieu Malaterre
On Fri, Dec 10, 2021 at 12:22 PM Étienne Mollier wrote: [...] > My impression by looking at it to unroll is that something seems > caught in a recursive loop. The bug is upstream. One cannot do: image = gdcm.Image() This will not work with the simple shared pointer implementation in

Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with

2021-12-10 Thread Steffen Möller
On 10.12.21 07:15, Andreas Tille wrote: Am Fri, Dec 10, 2021 at 03:07:51AM +0530 schrieb Nilesh Patra: On Thu, Dec 09, 2021 at 08:32:46PM +0100, Steffen Möller wrote: Hello this goes out to Andreas in particular, I hope you do not mind me taking over (have a few spare cycles) I definitely