Michael R. Crusoe pushed new branch docs at Debian Med / toil
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Michael R. Crusoe pushed new branch debian/fixed_history at Debian Med / toil
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Michael R. Crusoe pushed new branch debian/experimental at Debian Med / toil
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Michael R. Crusoe pushed to branch upstream at Debian Med / toil
Commits:
90bd77d7 by Michael R. Crusoe at 2024-05-27T08:45:56+02:00
New upstream version 7.0.0
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30 changed files:
- .gitlab-ci.yml
- LICENSE
- Makefile
- README.rst
- contrib/admin/mypy-with-ignore.py
- docker
Michael R. Crusoe pushed to branch pristine-tar at Debian Med / toil
Commits:
f1a1de6a by Michael R. Crusoe at 2024-05-27T08:46:07+02:00
pristine-tar data for toil_7.0.0.orig.tar.gz
- - - - -
2 changed files:
- + toil_7.0.0.orig.tar.gz.delta
- + toil_7.0.0.orig.tar.gz.id
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Michael R. Crusoe pushed to branch master at Debian Med / toil
Commits:
5f091245 by Michael R. Crusoe at 2024-05-27T08:45:55+02:00
routine-update: New upstream version
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90bd77d7 by Michael R. Crusoe at 2024-05-27T08:45:56+02:00
New upstream version 7.0.0
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9960451b by Michael
Michael R. Crusoe pushed new tag upstream/7.0.0 at Debian Med / toil
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Michael R. Crusoe pushed new branch wip at Debian Med / iqtree
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Michael R. Crusoe deleted tag upstream/2.0.3+dfsg at Debian Med / iqtree
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Michael R. Crusoe pushed to branch upstream at Debian Med / iqtree
Commits:
9105938f by Michael R. Crusoe at 2024-05-10T17:47:11+02:00
New upstream version 2.3.4+dfsg
- - - - -
6 changed files:
- CMakeLists.txt
- + CMakeSettings.json
- + CODE_OF_CONDUCT.md
- README.md
- alignment
Michael R. Crusoe pushed to branch pristine-tar at Debian Med / iqtree
Commits:
37b90461 by Michael R. Crusoe at 2024-05-10T17:47:17+02:00
pristine-tar data for iqtree_2.3.4+dfsg.orig.tar.xz
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2 changed files:
- + iqtree_2.3.4+dfsg.orig.tar.xz.delta
- + iqtree_2.3.4
Michael R. Crusoe pushed to branch master at Debian Med / iqtree
Commits:
9558336f by Michael R. Crusoe at 2024-05-10T17:47:10+02:00
routine-update: New upstream version
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9105938f by Michael R. Crusoe at 2024-05-10T17:47:11+02:00
New upstream version 2.3.4+dfsg
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256d4123
Michael R. Crusoe pushed new tag upstream/2.3.4+dfsg at Debian Med / iqtree
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Michael R. Crusoe pushed new tag debian/2.3.4+dfsg-1 at Debian Med / iqtree
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Michael R. Crusoe pushed new tag upstream/2.0.3+dfsg at Debian Med / iqtree
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Michael R. Crusoe pushed to branch master at Debian Med / iqtree
Commits:
e798798f by Michael R. Crusoe at 2024-05-10T17:46:44+02:00
d/{watch,upstream/metadata}: new location for upstreams GitHub repo.
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3 changed files:
- debian/changelog
- debian/upstream/metadata
- debian/watch
Michael R. Crusoe pushed to branch master at Debian Med / libsbml
Commits:
92866690 by Michael R. Crusoe at 2024-05-04T07:55:32+02:00
d/rules: correct test skipping logic for i386.
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2 changed files:
- debian/changelog
- debian/rules
Changes
Michael R. Crusoe pushed new tag debian/5.20.2+dfsg-7 at Debian Med / libsbml
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Michael R. Crusoe pushed to branch pristine-tar at Debian Med /
python-pybedtools
Commits:
c7945379 by Michael R. Crusoe at 2024-05-03T17:42:56+02:00
pristine-tar data for python-pybedtools_0.10.0.orig.tar.xz
- - - - -
2 changed files:
- + python-pybedtools_0.10.0.orig.tar.xz.delta
Michael R. Crusoe pushed to branch master at Debian Med / python-pybedtools
Commits:
fe2190f2 by Lance Lin at 2023-10-27T19:34:49+07:00
New upstream version 0.9.1
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0ed690ba by Michael R. Crusoe at 2024-05-03T17:42:50+02:00
routine-update: New upstream version
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462ee1df
Michael R. Crusoe pushed new tag upstream/0.10.0 at Debian Med /
python-pybedtools
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Michael R. Crusoe pushed new tag debian/0.10.0-1 at Debian Med /
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Michael R. Crusoe pushed new branch debian/experimental at Debian Med /
insighttoolkit
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Michael R. Crusoe pushed new tag debian/5.3.0-9_0exp0 at Debian Med /
insighttoolkit
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Michael R. Crusoe pushed to branch master at Debian Med / toil
Commits:
23688c5a by Michael R. Crusoe at 2024-04-29T16:41:53+02:00
d/control: we now need an explicit dependency on python3-tz. Closes: #1070055
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2 changed files:
- debian/changelog
- debian/control
Changes
Michael R. Crusoe pushed new tag debian/6.1.0-4 at Debian Med / toil
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debian-med-commit
Michael R. Crusoe pushed to branch master at Debian Med / libsbml
Commits:
3a727d2e by Michael R. Crusoe at 2024-05-03T16:25:37+02:00
d/rules: skip tests on i386 due to test_perl_binding failing
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2 changed files:
- debian/changelog
- debian/rules
Changes
Michael R. Crusoe pushed new tag debian/5.20.2+dfsg-6 at Debian Med / libsbml
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Michael R. Crusoe pushed to branch master at Debian Med / python-bx
Commits:
6936d52b by Michael R. Crusoe at 2024-05-03T15:33:40+02:00
d/rules,d/pybuild.testfiles: cleaner way of handling the test data
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3 changed files:
- debian/changelog
- + debian/pybuild.testfiles
- debian
Michael R. Crusoe pushed to branch pristine-tar at Debian Med / simde
Commits:
9877b396 by Michael R. Crusoe at 2024-05-02T13:01:04+02:00
pristine-tar data for simde_0.8.2.orig.tar.xz
- - - - -
2 changed files:
- + simde_0.8.2.orig.tar.xz.delta
- + simde_0.8.2.orig.tar.xz.id
Changes
Michael R. Crusoe pushed to branch upstream at Debian Med / simde
Commits:
ca084fcf by Michael R. Crusoe at 2024-05-02T13:00:32+02:00
New upstream version 0.8.2
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0 changed files:
Changes:
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Michael R. Crusoe pushed to branch master at Debian Med / simde
Commits:
d4ac4fc9 by Michael R. Crusoe at 2024-04-30T18:46:51+02:00
New upstream version 0.8.2~rc1
- - - - -
f74c87cb by Michael R. Crusoe at 2024-05-02T13:00:30+02:00
routine-update: New upstream version
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ca084fcf
Michael R. Crusoe pushed new tag upstream/0.8.2 at Debian Med / simde
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Michael R. Crusoe pushed new tag debian/0.8.2-1 at Debian Med / simde
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Michael R. Crusoe pushed to branch debian/experimental at Debian Med / simde
Commits:
abcb7498 by Michael R. Crusoe at 2024-03-14T14:11:34+01:00
New upstream version 0.8.0
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3f3c2c04 by Michael R. Crusoe at 2024-04-30T18:46:50+02:00
routine-update: New upstream version
Michael R. Crusoe pushed to branch pristine-tar at Debian Med / simde
Commits:
11267b7f by Michael R. Crusoe at 2024-04-30T18:47:12+02:00
pristine-tar data for simde_0.8.2~rc1.orig.tar.xz
- - - - -
2 changed files:
- + simde_0.8.2~rc1.orig.tar.xz.delta
- + simde_0.8.2~rc1.orig.tar.xz.id
Michael R. Crusoe pushed to branch upstream at Debian Med / simde
Commits:
d4ac4fc9 by Michael R. Crusoe at 2024-04-30T18:46:51+02:00
New upstream version 0.8.2~rc1
- - - - -
30 changed files:
- .appveyor.yml
- .cirrus.yml
- .github/workflows/ci.yml
- .packit.yml
- .packit/ci.sh
- .packit
Michael R. Crusoe pushed new tag debian/0.8.2_rc1-1 at Debian Med / simde
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debian
Michael R. Crusoe pushed new tag upstream/0.8.2_rc1 at Debian Med / simde
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debian
Michael R. Crusoe pushed new tag debian/5.20.2+dfsg-5 at Debian Med / libsbml
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Michael R. Crusoe pushed new tag debian/5.20.2+dfsg-4 at Debian Med / libsbml
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Michael R. Crusoe pushed to branch master at Debian Med / libsbml
Commits:
6d99ea55 by Michael R. Crusoe at 2024-04-29T14:32:04+02:00
Hand write the autopkgtest to only test against the default version of Python.
Closes: #1069876
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4 changed files:
- debian/changelog
- debian
Michael R. Crusoe pushed to branch master at Debian Med / edflib
Commits:
27392efa by Helmut Grohne at 2024-04-29T13:11:35+02:00
Express little-endian constraint via Build-Depends. (Closes: #1070046)
Co-authored-by: Michael R. Crusoe cru...@debian.org
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3 changed files:
- debian
Michael R. Crusoe pushed to branch master at Debian Med / python-pyfaidx
Commits:
5e0df922 by Michael R. Crusoe at 2024-04-26T14:25:18+02:00
d/control: build-dep on setuptools-scm to fix wrong 0.0.0 version
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d146d3de by Michael R. Crusoe at 2024-04-26T14:29:27+02:00
routine-update
Michael R. Crusoe pushed new tag debian/0.8.1.1-2 at Debian Med / python-pyfaidx
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Michael R. Crusoe pushed to branch master at Debian Med / python-hmmlearn
Commits:
2f5cee1b by Michael R. Crusoe at 2024-04-25T20:33:42+03:00
d/control: build-dep on setuptools-scm to fix wrong 0.0.0 version
Closes: #1064529
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e8432d7c by Michael R. Crusoe at 2024-04-25T20:58:06+03
Michael R. Crusoe pushed new tag debian/0.3.0-5 at Debian Med / python-hmmlearn
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Michael R. Crusoe pushed to branch pristine-tar at Debian Med / cwltest
Commits:
c5f186dd by Michael R. Crusoe at 2024-04-25T16:17:41+03:00
pristine-tar data for cwltest_2.5.20240425111257.orig.tar.gz
- - - - -
2 changed files:
- + cwltest_2.5.20240425111257.orig.tar.gz.delta
Michael R. Crusoe pushed new tag debian/2.5.20240425111257-1 at Debian Med /
cwltest
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Michael R. Crusoe pushed new tag upstream/2.5.20240425111257 at Debian Med /
cwltest
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Michael R. Crusoe pushed to branch master at Debian Med / subread
Commits:
b21fc485 by Michael R. Crusoe at 2024-04-25T13:13:33+03:00
d/test/control: python3 is needed
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fcda53d5 by Michael R. Crusoe at 2024-04-25T13:38:39+03:00
routine-update: Ready to upload to unstable
Michael R. Crusoe pushed new tag debian/2.0.6+dfsg-3 at Debian Med / subread
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Michael R. Crusoe pushed to branch master at Debian Med / subread
Commits:
dcce3f3c by Michael R. Crusoe at 2024-04-25T13:05:10+03:00
we already fixed this. Closes: #1069030
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1 changed file:
- debian/changelog
Changes:
=
debian/changelog
Michael R. Crusoe pushed to branch pristine-tar at Debian Python Team /
packages / mypy
Commits:
9d63a133 by Michael R. Crusoe at 2024-04-16T16:37:33+02:00
pristine-tar data for mypy_1.10.0~0rc1.git.20240415.e1443bbad.orig.tar.gz
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b42a4203 by Michael R. Crusoe at 2024-04-24T17:07:09
Michael R. Crusoe pushed to branch upstream at Debian Python Team / packages /
mypy
Commits:
d8289f16 by Michael R. Crusoe at 2024-04-24T17:06:58+03:00
New upstream version 1.10.0
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30 changed files:
- PKG-INFO
- docs/source/cheat_sheet_py3.rst
- docs/source/common_issues.rst
Michael R. Crusoe pushed to branch master at Debian Python Team / packages /
mypy
Commits:
1c2983ba by Michael R. Crusoe at 2024-04-24T17:06:58+03:00
routine-update: New upstream version
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fba799d3 by Michael R. Crusoe at 2024-04-24T17:08:56+03:00
New upstream version 1.10.0
Michael R. Crusoe pushed new tag upstream/1.10.0 at Debian Python Team /
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Michael R. Crusoe pushed new tag debian/1.10.0-1 at Debian Python Team /
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Michael R. Crusoe deleted branch debian/experimental at Debian Python Team /
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Michael R. Crusoe deleted branch arch-proposal at Debian Med / policy
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Michael R. Crusoe pushed to branch master at Debian Med / libmaus2
Commits:
6894f143 by Michael R. Crusoe at 2024-04-17T18:11:46+02:00
routine-update: Ready to upload to unstable
- - - - -
1 changed file:
- debian/changelog
Changes:
=
debian/changelog
Michael R. Crusoe pushed new tag debian/2.0.813+ds-2 at Debian Med / libmaus2
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Michael R. Crusoe pushed to branch master at Debian Med / libssw
Commits:
5c90ddd8 by Michael R. Crusoe at 2024-03-25T15:20:45+01:00
d/rules: append extra flag for ppc64el, dont override.
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2 changed files:
- debian/changelog
- debian/rules
Changes
Michael R. Crusoe pushed to branch master at Debian Med / libmaus2
Commits:
b4e10a25 by Michael R. Crusoe at 2024-04-17T16:01:21+02:00
Fix fix error caused by sysconf function with a patch from the bug
summiter.
(Closes: #1068573)
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848b6afb by Michael R. Crusoe at 2024-04-17T16:01
Michael R. Crusoe pushed to branch master at Debian Med / cwltool
Commits:
2f23191d by Michael R. Crusoe at 2024-04-15T11:39:26+02:00
No-change source-only upload.
- - - - -
1 changed file:
- debian/changelog
Changes:
=
debian/changelog
Michael R. Crusoe pushed new tag debian/3.1.20240404144621-2 at Debian Med /
cwltool
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Michael R. Crusoe pushed new branch debian/experimental at Debian Python Team /
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Michael R. Crusoe deleted branch debian/experimental at Debian Python Team /
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Michael R. Crusoe pushed to branch pristine-tar at Debian Python Team /
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Commits:
2c069912 by Michael R. Crusoe at 2024-03-27T12:36:54+01:00
pristine-tar data for mypy_1.10.0~0rc0.git.20240525.99f4b81.orig.tar.gz
- - - - -
2 changed files:
- + mypy_1.10.0~0rc0.git
Michael R. Crusoe pushed new branch upstream-snapshot at Debian Python Team /
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Michael R. Crusoe pushed new tag
debian/1.10.0_0rc0.git.20240525.99f4b81-0_0exp0 at Debian Python Team /
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Michael R. Crusoe pushed new tag upstream/1.10.0_0rc0.git.20240525.99f4b81 at
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Michael R. Crusoe pushed new tag debian/1.0.11-11 at Debian Med / prime-phylo
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Michael R. Crusoe pushed to branch master at Debian Med / prime-phylo
Commits:
e409ac42 by Michael R. Crusoe at 2024-04-12T14:16:30+03:00
Apply patch from Zixing Liu @ Canonical to fix FTBFS with GCC 13. Thanks!
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3 changed files:
- debian/changelog
- + debian/patches/fix-ftbfs
Michael R. Crusoe pushed to branch pristine-tar at Debian Med / cwltool
Commits:
8b842f25 by Michael R. Crusoe at 2024-04-10T16:48:12+03:00
pristine-tar data for cwltool_3.1.20240404144621.orig.tar.gz
- - - - -
2 changed files:
- + cwltool_3.1.20240404144621.orig.tar.gz.delta
Michael R. Crusoe pushed to branch master at Debian Med / cwltool
Commits:
76e9c2b3 by Michael R. Crusoe at 2024-03-08T19:01:25+01:00
d/upstream/metadata: mention the CACM paper.
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66e6c26c by Michael R. Crusoe at 2024-03-08T19:04:05+01:00
d/{control,rules}: build and package the HTML
Michael R. Crusoe pushed to branch upstream at Debian Med / cwltool
Commits:
92e738f9 by Michael R. Crusoe at 2024-04-10T16:48:07+03:00
New upstream version 3.1.20240404144621
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30 changed files:
- .git-blame-ignore-revs
- .github/workflows/ci-tests.yml
- .github/workflows/quay
Michael R. Crusoe pushed new tag debian/3.1.20240404144621-1 at Debian Med /
cwltool
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Michael R. Crusoe pushed new tag upstream/3.1.20240404144621 at Debian Med /
cwltool
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Michael R. Crusoe pushed to branch pristine-tar at Debian Python Team /
packages / python-schema-salad
Commits:
532d2f2d by Michael R. Crusoe at 2024-04-10T16:35:58+03:00
pristine-tar data for python-schema-salad_8.5.20240410123758.orig.tar.gz
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2 changed files:
- + python-schema
Michael R. Crusoe pushed new tag debian/8.5.20240410123758-1 at Debian Python
Team / packages / python-schema-salad
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Michael R. Crusoe pushed new tag upstream/8.5.20240410123758 at Debian Python
Team / packages / python-schema-salad
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https://salsa.debian.org/python-team/packages/python-schema-salad/-/tree/upstream/8.5.20240410123758
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Michael R. Crusoe pushed to branch master at Debian Med / cnvkit
Commits:
76b1a6ea by Michael R. Crusoe at 2024-03-05T10:55:40+01:00
d/control: the binary package is architecture independent.
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5891d5cb by Michael R. Crusoe at 2024-04-08T10:41:28+02:00
Merge branch debian/experimental
Michael R. Crusoe pushed new tag debian/0.9.10-2 at Debian Med / cnvkit
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debian-med
Michael R. Crusoe pushed to branch arch-proposal at Debian Med / policy
Commits:
6fd733f4 by Michael R. Crusoe at 2024-04-06T17:43:40+02:00
s/SHOULD/should/g
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1 changed file:
- policy.rst
Changes:
=
policy.rst
Michael R. Crusoe pushed new branch arch-proposal at Debian Med / policy
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debian-med
Michael R. Crusoe pushed new branch default-64-bits-little-endian at Debian Med
/ community / package_template
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Michael R. Crusoe pushed new branch official-coms at Debian Med / policy
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debian-med
Michael R. Crusoe pushed to branch master at Debian Med / policy
Commits:
736146fa by Michael R. Crusoe at 2024-04-05T09:33:38+02:00
publish docker upstream trick
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1 changed file:
- policy.html
Changes:
=
policy.html
Michael R. Crusoe pushed to branch master at Debian Med / populations
Commits:
acaa88c3 by Michael R. Crusoe at 2024-04-05T09:30:27+02:00
Remove ubuntu from the version number.
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1 changed file:
- debian/changelog
Changes:
=
debian/changelog
Michael R. Crusoe pushed new tag debian/1.2.33+svn0120106+dfsg-7 at Debian Med
/ populations
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Michael R. Crusoe pushed to branch master at Debian Med / policy
Commits:
d18ce208 by Michael R. Crusoe at 2024-04-05T09:28:39+02:00
upstream-repro-docker
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1 changed file:
- policy.rst
Changes:
=
policy.rst
Michael R. Crusoe pushed to branch master at Debian Med / reapr
Commits:
27d2ff8a by Michael R. Crusoe at 2024-04-05T09:05:13+02:00
* d/watch: https is now an option for the Sanger FTP site.
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2 changed files:
- debian/changelog
- debian/watch
Changes
Michael R. Crusoe pushed to branch pristine-tar at Debian Med / kalign
Commits:
8e107eba by Michael R. Crusoe at 2024-04-02T13:25:07+02:00
pristine-tar data for kalign_3.4.0.orig.tar.gz
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2 changed files:
- + kalign_3.4.0.orig.tar.gz.delta
- + kalign_3.4.0.orig.tar.gz.id
Changes
Michael R. Crusoe pushed to branch upstream at Debian Med / kalign
Commits:
0da8b281 by Michael R. Crusoe at 2024-04-02T13:25:05+02:00
New upstream version 3.4.0
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30 changed files:
- .gitignore
- CMakeLists.txt
- ChangeLog
- lib/CMakeLists.txt
- lib/src/aln_controller.c
- lib/src
Michael R. Crusoe pushed new tag upstream/3.4.0 at Debian Med / kalign
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debian-med
Michael R. Crusoe pushed to branch master at Debian Med / kalign
Commits:
3a3c9ce2 by Michael R. Crusoe at 2024-04-02T13:25:04+02:00
routine-update: New upstream version
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0da8b281 by Michael R. Crusoe at 2024-04-02T13:25:05+02:00
New upstream version 3.4.0
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8df81634
Michael R. Crusoe pushed new tag debian/1%3.4.0-1 at Debian Med / kalign
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debian
Michael R. Crusoe pushed to branch upstream at Debian Med / kallisto
Commits:
f1dc2a4a by Michael R. Crusoe at 2024-03-27T11:42:14+01:00
New upstream version 0.50.1+dfsg
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ad903f06 by Michael R. Crusoe at 2024-03-27T11:44:56+01:00
New upstream version 0.50.1+dfsg
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9 changed
Michael R. Crusoe pushed to branch pristine-tar at Debian Med / kallisto
Commits:
15b5740f by Michael R. Crusoe at 2024-03-27T11:41:43+01:00
pristine-tar data for kallisto_0.50.1+dfsg.orig.tar.xz
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774aa5aa by Michael R. Crusoe at 2024-03-27T11:42:18+01:00
pristine-tar data
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