[med-svn] [Git][med-team/artemis] Pushed new tag debian/18.1.0+dfsg-3

Pierre Gruet pushed new tag debian/18.1.0+dfsg-3 at Debian Med / artemis -- View it on GitLab: https://salsa.debian.org/med-team/artemis/-/tree/debian/18.1.0+dfsg-3 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/artemis][master] 2 commits: Standards version set to 4.5.1 (no changes needed)

Pierre Gruet pushed to branch master at Debian Med / artemis Commits: 3797762d by Pierre Gruet at 2020-12-04T17:24:58+01:00 Standards version set to 4.5.1 (no changes needed) - - - - - d96dcd20 by Pierre Gruet at 2020-12-04T20:49:23+01:00 Upload to unstable - - - - - 2 changed files: -

[med-svn] [Git][med-team/ugene] Pushed new tag debian/34.0+dfsg-2

Tony Mancill pushed new tag debian/34.0+dfsg-2 at Debian Med / ugene -- View it on GitLab: https://salsa.debian.org/med-team/ugene/-/tree/debian/34.0+dfsg-2 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/ugene] Pushed new branch 34.0+dfsg

Tony Mancill pushed new branch 34.0+dfsg at Debian Med / ugene -- View it on GitLab: https://salsa.debian.org/med-team/ugene/-/tree/34.0+dfsg You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/ncbi-blastplus][master] Update metadata - fixed indenting.

Steffen Möller pushed to branch master at Debian Med / ncbi-blastplus Commits: f92fd0af by Steffen Möller at 2020-12-04T23:58:31+00:00 Update metadata - fixed indenting. - - - - - 1 changed file: - debian/upstream/metadata Changes: =

[med-svn] [Git][med-team/bioperl-run][master] 2 commits: fix hyphy test plan

Étienne Mollier pushed to branch master at Debian Med / bioperl-run Commits: 3941c79b by Étienne Mollier at 2020-12-05T00:24:20+01:00 fix hyphy test plan - - - - - 8fb5dd13 by Étienne Mollier at 2020-12-05T00:51:30+01:00 suppress retries for accessing remote Blast - - - - - 3 changed

[med-svn] [Git][med-team/busco][master] Update metadata - added ref to bio.tools

Steffen Möller pushed to branch master at Debian Med / busco Commits: 4a10d909 by Steffen Möller at 2020-12-05T01:34:12+00:00 Update metadata - added ref to bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: =

[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille pushed to branch master at Debian Med / community / helper-scripts Commits: 60adc48c by Andreas Tille at 2020-12-05T01:45:22+00:00 automatic update - - - - - 2 changed files: - debian-med-tests.txt - outdated_med-packages.txt Changes: =

[med-svn] [Git][med-team/sambamba] Pushed new tag debian/0.8.0-1

Andreas Tille pushed new tag debian/0.8.0-1 at Debian Med / sambamba -- View it on GitLab: https://salsa.debian.org/med-team/sambamba/-/tree/debian/0.8.0-1 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/sambamba][master] 2 commits: Fix Meson syntax

Andreas Tille pushed to branch master at Debian Med / sambamba Commits: b90d16c7 by Andreas Tille at 2020-12-04T21:19:19+01:00 Fix Meson syntax - - - - - 3c84f73c by Andreas Tille at 2020-12-04T21:24:24+01:00 routine-update: Ready to upload to unstable - - - - - 3 changed files: -

[med-svn] [Git][med-team/fis-gtm][master] Source-only upload.

Andreas Tille pushed to branch master at Debian Med / fis-gtm Commits: 7450bd01 by Andreas Tille at 2020-12-04T23:47:07+01:00 Source-only upload. - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/fis-gtm] Pushed new tag debian/6.3-014-2

Andreas Tille pushed new tag debian/6.3-014-2 at Debian Med / fis-gtm -- View it on GitLab: https://salsa.debian.org/med-team/fis-gtm/-/tree/debian/6.3-014-2 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/perlprimer][master] 8 commits: routine-update: Standards-Version: 4.5.1

Andreas Tille pushed to branch master at Debian Med / perlprimer Commits: 44e84561 by Andreas Tille at 2020-12-04T22:57:07+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 0839e443 by Andreas Tille at 2020-12-04T22:57:08+01:00 routine-update: debhelper-compat 13 - - - - - 92e2ce5e by

[med-svn] [Git][med-team/perlprimer] Pushed new tag debian/1.2.4-2

Andreas Tille pushed new tag debian/1.2.4-2 at Debian Med / perlprimer -- View it on GitLab: https://salsa.debian.org/med-team/perlprimer/-/tree/debian/1.2.4-2 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/bioperl-run][master] 3 commits: add get-overlap.patch

Étienne Mollier pushed to branch master at Debian Med / bioperl-run Commits: ac21737c by Étienne Mollier at 2020-12-04T23:19:02+01:00 add get-overlap.patch It maps betools overlap to getOverlap. - - - - - 8dc23c6f by Étienne Mollier at 2020-12-04T23:21:23+01:00 build depend on bedtools

[med-svn] [Git][med-team/resfinder][master] 4 commits: Install Python modules

Andreas Tille pushed to branch master at Debian Med / resfinder Commits: 352027b4 by Andreas Tille at 2020-12-04T22:44:23+01:00 Install Python modules - - - - - 181976df by Andreas Tille at 2020-12-04T23:10:32+01:00 Set path in testscript, do not install trash - - - - - 8d0a15dd by Andreas

[med-svn] [Git][med-team/lambda-align2] Pushed new tag debian/2.0.0-8

Andreas Tille pushed new tag debian/2.0.0-8 at Debian Med / lambda-align2 -- View it on GitLab: https://salsa.debian.org/med-team/lambda-align2/-/tree/debian/2.0.0-8 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/lambda-align2][master] 4 commits: Do not set LAMBDA_COMPILE_THREADS explicitly but trust --paralle default dh option

Andreas Tille pushed to branch master at Debian Med / lambda-align2 Commits: bd3ea9dd by Andreas Tille at 2020-12-04T15:59:05+01:00 Do not set LAMBDA_COMPILE_THREADS explicitly but trust --paralle default dh option - - - - - 06b0a2df by Andreas Tille at 2020-12-04T15:59:28+01:00

[med-svn] [Git][med-team/bioperl-run][master] flag tests needing adaptations

Étienne Mollier pushed to branch master at Debian Med / bioperl-run Commits: 86ba0c47 by Étienne Mollier at 2020-12-04T23:57:46+01:00 flag tests needing adaptations These adaptations are due to the use of a dataset different from the reference data in use by bioperl-run upstream. - - - - -

[med-svn] [Git][med-team/librostlab-blast][master] 12 commits: routine-update: Standards-Version: 4.5.1

Andreas Tille pushed to branch master at Debian Med / librostlab-blast Commits: 1df7072a by Andreas Tille at 2020-12-04T23:19:53+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 8cf5bc27 by Andreas Tille at 2020-12-04T23:19:53+01:00 routine-update: debhelper-compat 13 - - - - -

[med-svn] [Git][med-team/mothur][master] 3 commits: Do not include sys/sysctl.h since it will be removed and is not used anyway

Andreas Tille pushed to branch master at Debian Med / mothur Commits: c14c3dde by Andreas Tille at 2020-12-04T21:52:18+01:00 Do not include sys/sysctl.h since it will be removed and is not used anyway - - - - - e4fff2b7 by Andreas Tille at 2020-12-04T21:52:49+01:00 routine-update:

[med-svn] [Git][med-team/lambda-align2] Deleted tag debian/2.0.0-8

Andreas Tille deleted tag debian/2.0.0-8 at Debian Med / lambda-align2 -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net

[med-svn] [Git][med-team/libsmithwaterman] Pushed new tag debian/0.0+git20160702.2610e25-11

Andreas Tille pushed new tag debian/0.0+git20160702.2610e25-11 at Debian Med / libsmithwaterman -- View it on GitLab: https://salsa.debian.org/med-team/libsmithwaterman/-/tree/debian/0.0+git20160702.2610e25-11 You're receiving this email because of your account on salsa.debian.org.

[med-svn] [Git][med-team/libsmithwaterman][master] 4 commits: Update symbols to unbreak Ubuntu builds on ppc64el and s390x

Andreas Tille pushed to branch master at Debian Med / libsmithwaterman Commits: 6fb1c79e by Andreas Tille at 2020-12-04T23:06:07+01:00 Update symbols to unbreak Ubuntu builds on ppc64el and s390x - - - - - e4c51dd8 by Andreas Tille at 2020-12-04T23:06:51+01:00 More generalised removal of *.la

[med-svn] [Git][med-team/clustalx] Pushed new tag debian/2.1+lgpl-9

Andreas Tille pushed new tag debian/2.1+lgpl-9 at Debian Med / clustalx -- View it on GitLab: https://salsa.debian.org/med-team/clustalx/-/tree/debian/2.1+lgpl-9 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/clustalx][master] 9 commits: routine-update: Standards-Version: 4.5.1

Andreas Tille pushed to branch master at Debian Med / clustalx Commits: e21c1722 by Andreas Tille at 2020-12-04T22:57:12+01:00 routine-update: Standards-Version: 4.5.1 - - - - - ec7ed11e by Andreas Tille at 2020-12-04T22:57:13+01:00 routine-update: debhelper-compat 13 - - - - - 3e9355a0 by

[med-svn] [Git][med-team/librostlab-blast][master] Rather refer to the bug report

Andreas Tille pushed to branch master at Debian Med / librostlab-blast Commits: a74eb001 by Andreas Tille at 2020-12-04T23:42:26+01:00 Rather refer to the bug report - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/lambda-align2][master] Close bug

Andreas Tille pushed to branch master at Debian Med / lambda-align2 Commits: b00a0d0e by Andreas Tille at 2020-12-04T22:48:34+01:00 Close bug - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/lambda-align2] Pushed new tag debian/2.0.0-8

Andreas Tille pushed new tag debian/2.0.0-8 at Debian Med / lambda-align2 -- View it on GitLab: https://salsa.debian.org/med-team/lambda-align2/-/tree/debian/2.0.0-8 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/mothur][master] Upload to unstable

Andreas Tille pushed to branch master at Debian Med / mothur Commits: ef248b03 by Andreas Tille at 2020-12-04T23:07:21+01:00 Upload to unstable - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/mothur] Pushed new tag debian/1.44.3-2

Andreas Tille pushed new tag debian/1.44.3-2 at Debian Med / mothur -- View it on GitLab: https://salsa.debian.org/med-team/mothur/-/tree/debian/1.44.3-2 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/treeview] Pushed new tag debian/1.1.6.4+dfsg1-5

Andreas Tille pushed new tag debian/1.1.6.4+dfsg1-5 at Debian Med / treeview -- View it on GitLab: https://salsa.debian.org/med-team/treeview/-/tree/debian/1.1.6.4+dfsg1-5 You're receiving this email because of your account on salsa.debian.org.

[med-svn] [Git][med-team/treeview][master] 8 commits: routine-update: Standards-Version: 4.5.1

Andreas Tille pushed to branch master at Debian Med / treeview Commits: e7a1a49d by Andreas Tille at 2020-12-04T15:54:24+01:00 routine-update: Standards-Version: 4.5.1 - - - - - bef4c1dc by Andreas Tille at 2020-12-04T15:54:24+01:00 routine-update: debhelper-compat 13 - - - - - 2204d9a6 by

[med-svn] [Git][med-team/king] Pushed new tag debian/2.23.161103+dfsg1-4

Andreas Tille pushed new tag debian/2.23.161103+dfsg1-4 at Debian Med / king -- View it on GitLab: https://salsa.debian.org/med-team/king/-/tree/debian/2.23.161103+dfsg1-4 You're receiving this email because of your account on salsa.debian.org.

[med-svn] [Git][med-team/king][master] 5 commits: routine-update: Standards-Version: 4.5.1

Andreas Tille pushed to branch master at Debian Med / king Commits: 4959cff8 by Andreas Tille at 2020-12-04T15:54:00+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 1b084d20 by Andreas Tille at 2020-12-04T15:54:00+01:00 routine-update: debhelper-compat 13 - - - - - 2257fde5 by

[med-svn] [Git][med-team/sambamba][master] 6 commits: New upstream version 0.7.1

Andreas Tille pushed to branch master at Debian Med / sambamba Commits: c47ca416 by Andreas Tille at 2019-12-17T21:08:32+01:00 New upstream version 0.7.1 - - - - - 20cbf3d9 by Andreas Tille at 2020-11-30T17:37:23+01:00 routine-update: New upstream version - - - - - 34f61dd7 by Andreas Tille

[med-svn] [Git][med-team/sambamba][pristine-tar] pristine-tar data for sambamba_0.8.0.orig.tar.gz

Andreas Tille pushed to branch pristine-tar at Debian Med / sambamba Commits: 92c1d195 by Andreas Tille at 2020-11-30T17:37:27+01:00 pristine-tar data for sambamba_0.8.0.orig.tar.gz - - - - - 2 changed files: - + sambamba_0.8.0.orig.tar.gz.delta - + sambamba_0.8.0.orig.tar.gz.id Changes:

[med-svn] [Git][med-team/sambamba] Pushed new tag upstream/0.8.0

Andreas Tille pushed new tag upstream/0.8.0 at Debian Med / sambamba -- View it on GitLab: https://salsa.debian.org/med-team/sambamba/-/tree/upstream/0.8.0 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/sambamba][upstream] New upstream version 0.8.0

Andreas Tille pushed to branch upstream at Debian Med / sambamba Commits: 34f61dd7 by Andreas Tille at 2020-11-30T17:37:24+01:00 New upstream version 0.8.0 - - - - - 30 changed files: - + .github/ISSUE_TEMPLATE/bug_report.md - − .github/issue_template.md - .gitignore - .gitmodules - +

[med-svn] [Git][med-team/pyranges][master] Update metadata - yet another fix

Steffen Möller pushed to branch master at Debian Med / pyranges Commits: 407af4f7 by Steffen Möller at 2020-12-04T15:10:28+00:00 Update metadata - yet another fix - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream/metadata

[med-svn] [Git][med-team/ecopcr] Pushed new tag debian/1.0.1+dfsg-2

Andreas Tille pushed new tag debian/1.0.1+dfsg-2 at Debian Med / ecopcr -- View it on GitLab: https://salsa.debian.org/med-team/ecopcr/-/tree/debian/1.0.1+dfsg-2 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/ecopcr][master] 5 commits: routine-update: Standards-Version: 4.5.1

Andreas Tille pushed to branch master at Debian Med / ecopcr Commits: 01a97473 by Andreas Tille at 2020-12-04T16:08:00+01:00 routine-update: Standards-Version: 4.5.1 - - - - - 018cc5dd by Andreas Tille at 2020-12-04T16:08:01+01:00 routine-update: debhelper-compat 13 - - - - - d7a01edc by

[med-svn] [Git][med-team/clearcut][master] Upload to unstable

Andreas Tille pushed to branch master at Debian Med / clearcut Commits: 4f978a52 by Andreas Tille at 2020-12-04T15:23:36+01:00 Upload to unstable - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/clearcut] Pushed new tag debian/1.0.9-6

Andreas Tille pushed new tag debian/1.0.9-6 at Debian Med / clearcut -- View it on GitLab: https://salsa.debian.org/med-team/clearcut/-/tree/debian/1.0.9-6 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/cyvcf2][upstream] New upstream version 0.30.0

Nilesh Patra pushed to branch upstream at Debian Med / cyvcf2 Commits: 5a8626a1 by Nilesh Patra at 2020-12-04T19:57:41+05:30 New upstream version 0.30.0 - - - - - 5 changed files: - .travis.yml - + ci/linux-deps - + ci/osx-deps - + ci/test - cyvcf2/__init__.py Changes:

[med-svn] [Git][med-team/cyvcf2] Pushed new tag upstream/0.30.0

Nilesh Patra pushed new tag upstream/0.30.0 at Debian Med / cyvcf2 -- View it on GitLab: https://salsa.debian.org/med-team/cyvcf2/-/tree/upstream/0.30.0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/kma][pristine-tar] pristine-tar data for kma_1.3.9.orig.tar.bz2

Nilesh Patra pushed to branch pristine-tar at Debian Med / kma Commits: 979caba8 by Nilesh Patra at 2020-12-04T20:07:01+05:30 pristine-tar data for kma_1.3.9.orig.tar.bz2 - - - - - 2 changed files: - + kma_1.3.9.orig.tar.bz2.delta - + kma_1.3.9.orig.tar.bz2.id Changes:

[med-svn] [Git][med-team/kma] Pushed new tag debian/1.3.9-1

Nilesh Patra pushed new tag debian/1.3.9-1 at Debian Med / kma -- View it on GitLab: https://salsa.debian.org/med-team/kma/-/tree/debian/1.3.9-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/kma] Pushed new tag upstream/1.3.9

Nilesh Patra pushed new tag upstream/1.3.9 at Debian Med / kma -- View it on GitLab: https://salsa.debian.org/med-team/kma/-/tree/upstream/1.3.9 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/abyss][master] 2 commits: s/bsdmainutils/bsdextrautils/ Required for abyss-tabtomd, which needs /usr/bin/column

Andreas Tille pushed to branch master at Debian Med / abyss Commits: f00b1d62 by Andreas Tille at 2020-12-04T14:10:02+01:00 s/bsdmainutils/bsdextrautils/ Required for abyss-tabtomd, which needs /usr/bin/column - - - - - bdde2189 by Andreas Tille at 2020-12-04T14:10:43+01:00 routine-update:

[med-svn] [Git][med-team/abyss][pristine-tar] pristine-tar data for abyss_2.2.5+dfsg.orig.tar.xz

Andreas Tille pushed to branch pristine-tar at Debian Med / abyss Commits: c32a50e2 by Andreas Tille at 2020-12-04T14:42:23+01:00 pristine-tar data for abyss_2.2.5+dfsg.orig.tar.xz - - - - - 2 changed files: - + abyss_2.2.5+dfsg.orig.tar.xz.delta - + abyss_2.2.5+dfsg.orig.tar.xz.id

[med-svn] [Git][med-team/abyss] Pushed new tag debian/2.2.5+dfsg-1

Andreas Tille pushed new tag debian/2.2.5+dfsg-1 at Debian Med / abyss -- View it on GitLab: https://salsa.debian.org/med-team/abyss/-/tree/debian/2.2.5+dfsg-1 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/abyss][master] 5 commits: Remove default gbp.conf

Andreas Tille pushed to branch master at Debian Med / abyss Commits: d3570fe2 by Andreas Tille at 2020-12-04T14:30:57+01:00 Remove default gbp.conf - - - - - 357aec8a by Andreas Tille at 2020-12-04T14:34:23+01:00 Remove unneeded docs of btllib since these contain compressed JS - - - - -

[med-svn] [Git][med-team/abyss][upstream] New upstream version 2.2.5+dfsg

Andreas Tille pushed to branch upstream at Debian Med / abyss Commits: 3818ea7d by Andreas Tille at 2020-12-04T14:42:19+01:00 New upstream version 2.2.5+dfsg - - - - - 12 changed files: - − RResolver/btllib/docs/annotated.html - − RResolver/btllib/docs/bc_s.png - −

[med-svn] [Git][med-team/abyss] Pushed new tag upstream/2.2.5+dfsg

Andreas Tille pushed new tag upstream/2.2.5+dfsg at Debian Med / abyss -- View it on GitLab: https://salsa.debian.org/med-team/abyss/-/tree/upstream/2.2.5+dfsg You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/cyvcf2][pristine-tar] pristine-tar data for cyvcf2_0.30.0.orig.tar.gz

Nilesh Patra pushed to branch pristine-tar at Debian Med / cyvcf2 Commits: 8e8918b9 by Nilesh Patra at 2020-12-04T19:57:43+05:30 pristine-tar data for cyvcf2_0.30.0.orig.tar.gz - - - - - 2 changed files: - + cyvcf2_0.30.0.orig.tar.gz.delta - + cyvcf2_0.30.0.orig.tar.gz.id Changes:

[med-svn] [Git][med-team/cyvcf2][master] 5 commits: New upstream version 0.30.0

Nilesh Patra pushed to branch master at Debian Med / cyvcf2 Commits: 5a8626a1 by Nilesh Patra at 2020-12-04T19:57:41+05:30 New upstream version 0.30.0 - - - - - bc4cac7c by Nilesh Patra at 2020-12-04T19:57:41+05:30 routine-update: New upstream version - - - - - 4a13e5b7 by Nilesh Patra at

[med-svn] [Git][med-team/cyvcf2] Pushed new tag debian/0.30.0-1

Nilesh Patra pushed new tag debian/0.30.0-1 at Debian Med / cyvcf2 -- View it on GitLab: https://salsa.debian.org/med-team/cyvcf2/-/tree/debian/0.30.0-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/sim4] Pushed new tag debian/0.0.20121010-8

Andreas Tille pushed new tag debian/0.0.20121010-8 at Debian Med / sim4 -- View it on GitLab: https://salsa.debian.org/med-team/sim4/-/tree/debian/0.0.20121010-8 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/sim4][master] 2 commits: Nelson A. de Oliveira has retired so remove him from Uploaders

Andreas Tille pushed to branch master at Debian Med / sim4 Commits: 72bfeec7 by Andreas Tille at 2020-12-04T15:29:08+01:00 Nelson A. de Oliveira nao...@debian.org has retired so remove him from Uploaders - - - - - a76eaead by Andreas Tille at 2020-12-04T15:30:25+01:00 Upload to unstable - -

[med-svn] [Git][med-team/seqan][master] Update metadata - update bio.tools

Steffen Möller pushed to branch master at Debian Med / seqan Commits: d3697931 by Steffen Möller at 2020-12-04T15:33:08+00:00 Update metadata - update bio.tools - - - - - 1 changed file: - debian/upstream/metadata Changes: = debian/upstream/metadata