Ryo IGARASHI writes:
> Looking at your patch, why do you delete all the #ifndef block in the
> first place? Adding just "#define EIGEN_MALLOC_ALREADY_ALIGNED 0" line
> on top of the #ifndef block should do the job.
That would work, but I don't think it makes a huge difference either
way. The
ation/free are implemented the same
way REGARDLESS of build flags. This ensures that an application using Eigen
(possibly indirectly, through libraries) will not crash due to non-identical
build flags
Author: Dima Kogan
diff --git a/Eigen/src/Core/util/Memory.h b/Eigen/src/Core/util/Memory.h
index 875318
Hi Leopold.
I use beamer regularly, but have never wanted to put videos into the
slides. I would like to know more about the tools, though. Is the issue
that existing pdf viewers can't play embedded video (i.e. do other
people's video presentation work)? Or is it that pdflatex cannot produce
pdfs
Hi Anton. Thanks for replying.
Anton Gladky writes:
> I have been maintaining the Eigen library in Debian for over 12 years,
> and I cannot recall the specific bug ticket related to this topic.
I believe it. I suspect the reason is that you get mystery crashes that
require
Hi.
Apologies for taking so long to look at this again; I've been busy.
I just looked into it, and my conclusion is that there's no way to
ensure that Eigen won't crash without us patching our package. So we
should patch our package.
I'm attaching a tiny demo program. Extract it and
make &&
Thank you very much for the notes.
The Eigen code I see does everything with the preprocessor. Which is
fine, and doesn't mean that it must crash. For the specific package I'm
building (libg2o) Eigen is the only option, but this sounds like a
generic problem that affects all sorts of packages,
Thanks for replying
u...@debian.org (Aaron M. Ucko) writes:
> It might help to make Eigen's symbols local to your shared library; to
> that end, I think it would work to feed the linker a version script
> reading something along the lines of
>
> {
> local:
> extern "C++" {
>
Hi. I'm packaging something that uses Eigen, and I'm running into a
persistent compatibility issue I don't currently know how to solve. Help
appreciated.
Here's the problem. Eigen is a C++ header-only library that's heavy into
templating. So all the functions inside Eigen produce weak symbols,
Hi.
Andreas Tille writes:
> IMHO its sensible to follow the latest toolset version sooner or
> later. There are several sensible features and if your packages are
> vanilla and simple there is no good reason to stick to any specific
> debhelper compat version.
The reason is that a package that
Hi Nilesh and Stuart. That email on debian-devel describes my use case
well. My packages are vanilla-enough that there's little value in doing
anything more than Build-Depends: debhelper (>=11) and sticking "11" in
debian/compat or something like that. Let me know if this has some major
downsides
Hi. I've been manually checking the merge requests, and have been
accepting most of them. There is one thing the janitor does that I don't
agree with, and I'd be against any automated merging of those patches.
This is adding Build-Depends: debhelper-compat (=WHATEVER). Such
dependencies break
Albert van der Horst writes:
> I don't see the problem here. If there is a bug in an old version
> supplied with Debian, the bug report lands with Debian. Then Debian
> can solve the bug report by renewing upstream. Sot that bug report is
> not against the package, but against the packaging. If
In my completely unbiased opinion, you should use my tools!
feedgnuplot (http://github.com/dkogan/feedgnuplot) to plot stdin in
various flexible ways
vnlog (http://github.com/dkogan/vnlog) to manipulate textual tables in
various flexible ways
Starting with Carsten's modified example to add a
Drew Parsons writes:
> Speak up if you have arguments for retaining the current split-library
> structure (and take over maintenance to make it happen).
My feeling is that we should be editorializing on upstream's decisions
as little as possible. So I definitely support un-splitting the
Answering some of my own questions inline...
Dima Kogan writes:
> 2. Is the MPI implementation significant? Would mpich behave
> potentially differently here from openmpi?
I rebuilt sundials with mpich instead of openmpi, and those tests now
work just fine: nothing locks up. There
Sébastien Villemot writes:
> On Sat, Jun 16, 2018 at 10:16:18PM -0700, Dima Kogan wrote:
>
>> These packages are not perfect, but I think they're good-enough to push.
>> So I just pushed them to the archive. They still need to clear NEW, so
>> don't expect them to
James Tocknell writes:
> 2. The new matrix/solver libs refer to a (which one isn't specified)
> LICENSE file, but appear to not match any one. I've currently put them
> under the top level LICENSE (LLNL/LLNS), but that's doesn't match the top
> of the files (LLNS/SMU). Suggestions of how to
Drew Parsons <dpars...@debian.org> writes:
> On Sun, 2018-05-20 at 16:12 -0700, Dima Kogan wrote:
>> I'm working on Sundials right now, and I noticed that Debian ships
>> the
>> non-parallelized SuperLU (in "libsuperlu..." packages) but not the
&
Hi.
Can a science-team admin on salsa please change the permissions of this
project:
https://salsa.debian.org/science-team/vnlog
to be publically viewable? I can't do it myself.
Thanks!
James Tocknell writes:
> Upstream has at the very least moved files around, and based on the
> changelog that upstream posted, there are definitely ABI breaks. I did go
> through the files and update d/copyright, but I need to do one final pass
> before I push it. I plan on
Hi all.
I'm working on Sundials right now, and I noticed that Debian ships the
non-parallelized SuperLU (in "libsuperlu..." packages) but not the
multi-threaded superlu-mt. Upstream:
http://crd-legacy.lbl.gov/~xiaoye/SuperLU/
Does anybody know if there's some specific reason for this (funny
Andreas Tille writes:
> I need to package the R interface to sundials[1] which contains a code
> copy of some more recent version than the Debian package. I wonder
> whether there is some reason to stick to version 2.7.0 while upstream
> has released 3.1.1.
Hi. Lack of time
Mattia Rizzolo <mat...@debian.org> writes:
> On Sun, Apr 01, 2018 at 05:56:38PM -0700, Dima Kogan wrote:
>> Hi. Yes, that's the document I'm reading, and it does say to use the web
>> interface. I think it'll be more helpful if it said something like
>>
>>
James Clarke writes:
> I don't know what copy of the document you're reading, but it has
> already been updated, and the Alioth page redirects to its new
> location on Salsa[0] which also contains a link to the repository.
>
> [0] https://science-team.pages.debian.net/policy/
Anton Gladky writes:
> you should not ssh into the git.debian.org to create the project on
> salsa. Please use the web interface from salsa to create a new repo.
OK, I'll do that in the future. But this repository exists already. Can
somebody please change its permissions to
Hi all.
I have a new project in debian-science:
https://salsa.debian.org/science-team/vnlog
I THINK I created it the normal way:
1. ssh git.debian.org
2. cd /git/debian-science
3. ./setup-repository ..
I did this a little while ago, so maybe I'm misremembering. In any case,
the
Dima Kogan <d...@secretsauce.net> writes:
> S�bastien Villemot <sebast...@debian.org> writes:
>
>> Any update on this? I see that the git upstream branch has been
>> updated to 3.1. Is there any blocker, other than lack of time? I'm
>> willing to help if nee
Sébastien Villemot writes:
> Any update on this? I see that the git upstream branch has been
> updated to 3.1. Is there any blocker, other than lack of time? I'm
> willing to help if needed.
Lack of time. I was going to return to this in a few weeks, but if you
have cycles
Daniel Stender writes:
> I've problems with importing the upstream tarball into the repo of Bcolz:
>
>
> $ uscan --no-conf --verbose --download --force-download --destdir ../
> --rename --repack --compression xz
> {...}
> $ gbp import-orig
Gudjon I. Gudjonsson writes:
>> This generates the attached report. I guess the proposed patch changes
>> the layout of the vtable, so calls to virtual functions past the vtable
>> changes would break.
I just looked at the report again, and I'm no longer entirely sure it
Gudjon I. Gudjonsson writes:
> I have been trying to make a python wrapper to the library:
> https://github.com/GauiStori/PyQt-Qwt
> So far it works ok for me even if it doesn't support all Qwt functionality
> but it
> only builds if I add the attached patch.
> Most of the
Hi all.
Sid currently has sundials 2.7. There's a new major release from
upstream: 3.1.0:
https://computation.llnl.gov/projects/sundials/sundials-software
I haven't started to look at the update yet. Does anybody know of a
reason to NOT update our packages yet? I.e. is anybody maintaining
Martin Lund <martin.l...@keep-it-simple.com> writes:
> On Sat, Dec 16, 2017 at 9:13 PM, Dima Kogan <dko...@debian.org> wrote:
>
>> I can probably take a look at it at some point. I don't have any of the
>> relevant hardware, however. You'd test the packages, yes?
Martin Lund writes:
> I'm the author and maintainer of https://lxi-tools.github.io - an open
> source project trying to create good and simple tools to manage and control
> LXI compatible instruments such as modern oscilloscopes, power supplies,
> spectrum
Mattia Rizzolo writes:
> Did anybody ever tried sending a PR upstream? In your first message
> you linked to bug reports, not PRs. I'd first start there, if such a
> patch is so simple as you claim it would be, and it is techinically
> correct, I don't see a reason for it to
Ghislain Vaillant writes:
>> 2. Patch our build of OpenCV3 that works with the older API. Right now,
>> this actually is simple (I think). We'd just need to move the
>> definition of cvRound() to C header instead of a C++ one. I'm sure
>> there're details to be
Hi all.
So it looks like the OpenCV people have pretty much abandoned their C
API, to the point where trivial applications no longer build:
https://github.com/opencv/opencv/issues/6221
https://github.com/opencv/opencv/issues/8658
https://github.com/opencv/opencv/issues/10246
They're
Drew Parsons writes:
> Heads up on sundials, PETSc 3.8 has just been released. I'll upload to
> experimental soon, and to unstable as soon as practicable. Hopefully
> sundials won't have trouble with the new petsc.
I'll try it out when you make the upload. Was there an ABI
James Tocknell writes:
> Using CMAKE_SKIP_INSTALL_PATH or CMAKE_SKIP_RPATH instead of
> CMAKE_SKIP_BUILD_PATH appear to produce the same result as
> CMAKE_SKIP_BUILD_PATH with respect to RPATHs, so unless there was a bug in
> cmake, I'm not sure what I tried previously.
James Tocknell writes:
> I looked at the RPATH change, lintian doesn't show any RPATH warnings
> for me, I also ran readelf on the shared libraries, no RPATH or
> RUNPATH. I'm building via gbp and cowbuilder on amd64 (with sid as the
> target distro), could that be the
S�bastien Villemot writes:
> On Wed, Jul 26, 2017 at 11:28:22AM +1000, James Tocknell wrote:
>> I've updated debian/copyright on master (on sundials.git) with some of the
>> changes (which I did via grepping the files), but I probably haven't got
>> everything (the
S�bastien Villemot writes:
> So I am willing to help with the upcoming transition (once the package
> is in experimental), and in general with any specific difficulty that
> you may have encountered. Don't hesitate to ask me.
Thanks! I need to fix the debian/copyright and
Andreas Tille writes:
> I can confirm that the package builds at my side and has only lintian
> issues that are acceptable for me. If you ask me I would not mind to
> upload without ths symbols files in this specific case but I'll leave
> the decision to you.
I updated the
Drew Parsons <dpars...@debian.org> writes:
> On Sat, 2017-05-27 at 23:52 -0700, Dima Kogan wrote:
>> I'm looking at the sundials packaging again.
> ...
>> What about the -dev package? I THINK putting everything into a single
>> libsundials-dev is OK, and shouldn
Science people:
I'm looking at the sundials packaging again. This is an umbrella library
that has several different sub-libraries for
- different ODE solvers
- linear algebra backends used by these solvers
The granularity question came up earlier, and some of you pointed me to
a section in the
Zoltan Gyarmati writes:
> @Andreas, i've set the corresponding bugs to ITA, and i think we can
> start the review process at your convenience. I'm starting a separated
> thread about that here at debian-mentors.
Hi. It's on my list to look at your packages, I just
Andreas Tille writes:
> On Sat, Mar 11, 2017 at 03:32:42AM +0100, Zoltan Gyarmati wrote:
>> Dear Mentors,
>>
>> at the beggining of the last week i submitted a couple of RFSs[1]
>> regarding to the packages related to the sigrok[2] suite and its updates
>> since the last
Dima Kogan <d...@secretsauce.net> writes:
> Andreas Tille <andr...@an3as.eu> writes:
>
>> OK. But please do not hesitate to long. We are talking about an upload
>> to *experimental*. I see no point in delaying an upload to do some
>> sophisticated engineeri
Andreas Tille writes:
> OK. But please do not hesitate to long. We are talking about an upload
> to *experimental*. I see no point in delaying an upload to do some
> sophisticated engineering while people are waiting to build other code
> against latest sundials.
OK. If you
Andreas Tille writes:
> I fixed some lintian info grade issues (duplicated descriptions,
> hardening=+bindnow) and I'm about to upload to experimental. The
> debian/changelog entries from Dima and James are a bit sparse /
> non-existant and we should establish a better culture
Just pushed some patches. Notes inline.
Andreas Tille writes:
> While I keep on wondering why you are not pushing to master your commit
> 26d465d9dff18866d0fe5a4ffa942e49771ef7e5 (or what you are refering to
> with "Fix pushed" does not address the problem). I can confirm
Andreas Tille writes:
> While I keep on wondering why you are not pushing to master
I haven't been intentionally pushing to something other than master for
a little while. Apparently I've been pushing to a branch called
"origin/master". You read that right. The remote branch
Dima Kogan <d...@secretsauce.net> writes:
> Andreas Tille <ti...@debian.org> writes:
>
>> I tried to merge master_optional_stuff_enabled branch into master
>> but this does not build since
>>
>> Package PETSc was not found in the pkg-config search pa
Andreas Tille writes:
> I tried to merge master_optional_stuff_enabled branch into master
> but this does not build since
>
> Package PETSc was not found in the pkg-config search path.
This should work in general, and I don't know where you see this error.
The Build-dep:
Andreas Tille <ti...@debian.org> writes:
> commit 26038269fc23ecf26abb85cd78fced63a3799a87
> Author: Dima Kogan <d...@secretsauce.net>
> Date: Fri Feb 10 19:26:13 2017 -0800
>
> I don't build the static libraries
>
> Usually we provide *.a files insid
Andreas Tille writes:
> So could anybody please, pretty please commit something that really
> results in installable packages?
I guess if you insist!
I worked on this, and I claim the branch in master should build. Please
look through the commits to make sure it all makes
Andreas Tille writes:
> /usr/bin/ld: cannot find -lpthreads
>
> I'm using a just updated pbuilder chroot. Any hints?
Did you add Build-Depends: python ?
James Clarke writes:
>> dh_install: Cannot find (any matches for) "bin/sundials-config" (tried in
>> "." and "debian/tmp")
bin/sundials-config isn't something that upstream builds anymore, I
don't think. Removing this from the appropriate install makes it go much
further.
James Clarke writes:
> Looking at your error message again, that seems to be coming from CMake
> searching for pthread_create, which it does by first searching for a
> libpthreads (which doesn't exist on Linux), then a libpthread, which is
> the one that exists. My build
Andreas Tille writes:
> On Wed, Feb 01, 2017 at 11:48:08PM +, Ghislain Vaillant wrote:
>> > I admit I would have prefered if you would have left you as owner and
>> > would take over the lead here.
>>
>> I thought I was stepping on someone else's work (Dima or James)
Andreas Tille writes:
> Hi folks,
>
> I just realised that our packaged sundials is lagging two releases
> behind upstream. Its a bit bad to learn this right now - some days
> after changes can make it into Stretch. :-(
Hi. We talked about this a few months ago:
pcb-...@igor2.repo.hu writes:
> I got redirected from pkg-electronics-devel to debian-science with the
> request below. I already have a working binary package lintian finds
> good, the source package still has some lintian warnings. I'm the upstream
> developer/maintainer; if someone is
James Tocknell writes:
> I looked at 2.7.0, there's another ABI break: it looks like Sls* symbols
> were moved to Sparse*. I've nearly finished cleaning up what I did, the
> main problem is the soversions, it looks like upstream is assuming
> soversion == release version.
James Tocknell writes:
> I do plan on finishing it, but was going to wait till after the freeze
> to push it to the archive, as it involved dropping octave-sundials,
> which now seems like a moot point given upstream's decision to drop
> the matlab interface from the release.
James Tocknell writes:
> How much of the packaging have you done? I've almost done 2.6-2.6.2, the
> main problem was trying to make octave-sundials multiarch (given the build
> system used upstream is a hacky matlab script). I've got multiarch working
> for the rest of
Hi.
I'm packaging the new 2.7.0 release of sundials to update our very old
2.5.0 packages. Upstream has removed (possibly temporarily) the matlab
toolbox:
http://computation.llnl.gov/projects/sundials/sundials-software
Thus a packaging of 2.7.0 would remove the octave-sundials package. Any
Hi. I have a new version of vlfeat ready for upload. I have DM rights to
push it myself, but upstream changed their ABI, so there's a new
package. The tree is at
http://anonscm.debian.org/cgit/debian-science/packages/vlfeat.git
Thanks much
dima
--
To UNSUBSCRIBE, email to
gladky.an...@gmail.com writes:
Why do you have this line in all debian/rules?
.PHONY: override_dh_auto_clean override_dh_strip
debian/rules is a Makefile. override_dh_auto_clean is declared as a
target with no prerequisites, so normally if there exists a file called
'override_dh_auto_clean',
Hi
Andreas Tille andr...@an3as.eu writes:
I checked this out and have noticed in debian/README.source:
The SIFT implementation was removed from the source ...
That's OK, but if you change the upstream source you should either
provide
a) get-orig-source target in d/rules
b)
Yaroslav Halchenko deb...@onerussian.com writes:
FWIW -- I have tried to build backports using our neurodebian setup... it
seem
that all 32bit userland builds (while system is running on 64bit kernel)
fail with
...
I'll take a look. I was trying to keep as much of the upstream build
Dima Kogan d...@secretsauce.net writes:
Yaroslav Halchenko deb...@onerussian.com writes:
FWIW -- I have tried to build backports using our neurodebian setup... it
seem
that all 32bit userland builds (while system is running on 64bit kernel)
fail with
...
I'll take a look. I was trying
Yaroslav Halchenko deb...@onerussian.com writes:
On Fri, 22 Nov 2013, Dima Kogan wrote:
faith in it now. Yaroslav, can you pleaase try it again on your 32-bit
install? I can set one up in emulation, but hopefully it just works now.
The tree is here:
http://anonscm.debian.org/gitweb/?p
Andreas Tille andr...@an3as.eu writes:
Hi Dima,
On Thu, Nov 07, 2013 at 11:10:54PM -0800, Dima Kogan wrote:
2013/11/8 Dima Kogan d...@secretsauce.net:
Hi all.
I packaged VLFeat (http://vlfeat.org), and am looking for sponsorship.
Anton Gladky gladky.an...@gmail.com writes:
Hi
Hi all.
I packaged VLFeat (http://vlfeat.org), and am looking for sponsorship.
This is a computer vision library that implements a number of useful
algorithms.
The completed packages were uploaded to mentors:
http://mentors.debian.net/package/vlfeat
The ITP lives here:
2013/11/8 Dima Kogan d...@secretsauce.net:
Hi all.
I packaged VLFeat (http://vlfeat.org), and am looking for sponsorship.
Anton Gladky gladky.an...@gmail.com writes:
Hi Dima, I will be glad to review/upload this package.
But i can do it only on weekends.
Thank you very much, Anton
On Mon, 17 Dec 2012 09:40:49 +0900
Nobuhiro Iwamatsu iwama...@nigauri.org wrote:
And I can not check your GPG key I have noticed that your key is
signed by nobody.
If possible, please do key signing with other people.
Probably, it is better if it is Debian Developer.
He's looking for
On Tue, 13 Nov 2012 09:26:22 +0100
Andreas Tille andr...@an3as.eu wrote:
Hi Dima,
On Mon, Nov 12, 2012 at 10:26:13PM -0800, Dima Kogan wrote:
The missing copyright status of debian/* was an oversight on my part. I just
added it. Thanks for the comments.
Uploaded. BTW, I'm afraid
On Mon, 12 Nov 2012 08:36:46 +0100
S__bastien Villemot sebast...@debian.org wrote:
Dima Kogan d...@secretsauce.net writes:
On Sun, 11 Nov 2012 22:57:41 +0100
Andreas Tille ti...@debian.org wrote:
On Sun, Nov 11, 2012 at 01:29:17PM -0800, Dima Kogan wrote:
dpkg-source: error
, Nov 04, 2012 at 10:50:15PM -0800, Dima Kogan wrote:
OK. Thanks, Andreas.
I just finished the packaging of those two libraries. Their gitwebs are
http://anonscm.debian.org/gitweb/?p=debian-science/packages/libdogleg.git
http://anonscm.debian.org/gitweb/?p=debian-science/packages
On Sun, 11 Nov 2012 22:57:41 +0100
Andreas Tille ti...@debian.org wrote:
On Sun, Nov 11, 2012 at 01:29:17PM -0800, Dima Kogan wrote:
dpkg-source: error: can't build with source format '3.0 (quilt)': no
upstream tarball found at ../libdogleg_0.08.orig.tar.{bz2,gz,lzma,xz}
Any
On Sun, 4 Nov 2012 23:03:29 +0100
Andreas Tille andr...@fam-tille.de wrote:
Hi,
Debian Med was a simple typo - I intended to write Debian Science.
Kind regards
Andreas.
On Sat, Nov 03, 2012 at 04:23:49PM -0700, Dima Kogan wrote:
On Sat, 3 Nov 2012 18:38:05 +0100
On Sat, 3 Nov 2012 18:38:05 +0100
Andreas Tille andr...@an3as.eu wrote:
Hi Dima,
you have submitted a series of ITPs which are all quite interesting for
Debian Science. Are you considering to maintain these package in the
Debian Med team (and its repositories on Alioth)?
Kind regards
On Tue, 11 Sep 2012 07:29:02 +0200
Anton Gladky gladky.an...@gmail.com wrote:
Hi,
it seems, your package looks fine. Some minor suggestions:
- New upload should close ITP bug. Just add Close at the end of
changelog-line:
* debian packaging cleanup. (Closes: #686413)
-
Hi all.
I am looking for a sponsor for my package feedgnuplot. This is a
general-purpose tool to construct plots from standard input. It can
be used to plot both realtime and stored data. A trivial example:
$ seq 5 | feedgnuplot
will plot a line. Fancy things are possible. For
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