Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

2021-01-27 Thread Steffen Möller
Hi all, Am 06.11.20 um 23:20 schrieb Diane Trout: > On Fri, 2020-11-06 at 08:23 +0100, Andreas Tille wrote: >> Dear Diane, >> >> would you mind pushing your patch to the Git repository? I mean its >> your ITP and you are Uploader - so I hesitate to push your very own >> patch on behalf of you.

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

2020-11-06 Thread Andreas Tille
Dear Diane, On Fri, Nov 06, 2020 at 02:20:59PM -0800, Diane Trout wrote: > > I pushed the patches... Thanks a lot. > Is there anything else anyone wants to do to > the package or should I submit to NEW? Considering your involvement I think it would be appropriate if you would upload to NEW.

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

2020-11-06 Thread Diane Trout
On Fri, 2020-11-06 at 08:23 +0100, Andreas Tille wrote: > Dear Diane, > > would you mind pushing your patch to the Git repository? I mean its > your ITP and you are Uploader - so I hesitate to push your very own > patch on behalf of you. ;-) > > Thanks a lot for your helpful hints and

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

2020-11-05 Thread Andreas Tille
Dear Diane, would you mind pushing your patch to the Git repository? I mean its your ITP and you are Uploader - so I hesitate to push your very own patch on behalf of you. ;-) Thanks a lot for your helpful hints and contacting upstream Andreas. On Thu, Nov 05, 2020 at 02:14:12PM -0800,

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

2020-11-05 Thread Diane Trout
On Thu, 2020-11-05 at 14:59 -0800, Diane Trout wrote: > On Thu, 2020-11-05 at 21:08 +0100, Andreas Tille wrote: > > Control: tags -1 help > > > > Hi Diane and Steffen, > > > > I fixed the Build-Depends in this package which leads to the > > effect that > > > > a) the Build-time test is run >

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

2020-11-05 Thread Diane Trout
On Thu, 2020-11-05 at 21:08 +0100, Andreas Tille wrote: > Control: tags -1 help > > Hi Diane and Steffen, > > I fixed the Build-Depends in this package which leads to the > effect that > > a) the Build-time test is run > b) shows the same errors as the autopkgtest I went ahead and filed an

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

2020-11-05 Thread Diane Trout
It sure looks like at least some of those failures are from upstreams tests assuming they'd be run directly in the source tree. All but one of the test cases can be fixed by including some test files in the package, though it ends up in anndata/tests/ It's about 9 kilobytes with a csv, tsv, and

Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix)

2020-11-05 Thread Andreas Tille
Control: tags -1 help Hi Diane and Steffen, I fixed the Build-Depends in this package which leads to the effect that a) the Build-time test is run b) shows the same errors as the autopkgtest ... anndata/tests/test_deprecations.py::test_get_uns_neighbors_deprecated FAILED [ 36%] ...