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Edward J. Yoon reopened HAMA-859:
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{code}
edward@edward-VirtualBox:~/workspace/hama-trunk$ bin/start-bspd.sh
localhost: starting
:
- Current supersteps number: 2
- The total number of supersteps: 2
- SUPERSTEPS=2
Can anyone help me clarify what's the exact semantic of them?
I'm running that using trunk in local mode, any clarification would be
appreciated.
Thanks in advance,
Tommaso
--
Best Regards, Edward J. Yoon
: java.lang.OutOfMemoryError: Java heap space
Hama-TRUNK (DiskVerticesInfo): java.lang.OutOfMemoryError: Java heap space
--
Best Regards, Edward J. Yoon
@eddieyoon
Edward J. Yoon created HAMA-862:
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Summary: Error partitioning the input path
Key: HAMA-862
URL: https://issues.apache.org/jira/browse/HAMA-862
Project: Hama
Issue Type: Bug
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https://issues.apache.org/jira/browse/HAMA-838?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13882741#comment-13882741
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Edward J. Yoon commented on HAMA-838:
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Maybe I am wrong. But I was really hard to check
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Edward J. Yoon commented on HAMA-859:
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+1
Leverage commons cli2 to parse the input
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Edward J. Yoon commented on HAMA-860:
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+1 Please feel free to commit it!
Make
Edward J. Yoon created HAMA-861:
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Summary: Add statistical report for random data generator tools
Key: HAMA-861
URL: https://issues.apache.org/jira/browse/HAMA-861
Project: Hama
Issue Type
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https://issues.apache.org/jira/browse/HAMA-861?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13882540#comment-13882540
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Edward J. Yoon commented on HAMA-861:
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Total bytes, number of output files, rows
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Edward J. Yoon commented on HAMA-859:
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The redesigned CLI2 is rooted
the users can use it. I said that I will handle the documentation on the wiki
for the aggregators, I have it on schedule for this weekend.
Cheers,
Anastasis
On 23 Ιαν 2014, at 2:30 π.μ., Edward J. Yoon edwardy...@apache.org wrote:
I found a bug in aggregator.
In parseMessages, you calls
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Edward J. Yoon updated HAMA-838:
Attachment: patch.txt
This patch adds aggregate(int index, M value) and getAggregatedValue(int index
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Edward J. Yoon updated HAMA-838:
Attachment: patch_v02.txt
attach patch_v02.txt
Add custom aggregators
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Edward J. Yoon commented on HAMA-838:
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I've committed my changes (before leaving
..)
The AbsDiffAggregator is a complicate case. I don't see any convenient way to
support it with a simple interface like vertex.aggregate(name, value); I
don't see a way to interact it with
On 23 Ιαν 2014, at 12:14 μ.μ., Edward J. Yoon edwardy...@apache.org wrote:
Yes, basically I agree with you. User
the last value.
Like our old code,
getAggregationRunner().aggregateVertex(lastValue, vertex);
You should aggregates all values.
--
Best Regards, Edward J. Yoon
@eddieyoon
);
--
Best Regards, Edward J. Yoon
@eddieyoon
Edward J. Yoon created HAMA-857:
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Summary: Graph Combiners is wrongly implemented
Key: HAMA-857
URL: https://issues.apache.org/jira/browse/HAMA-857
Project: Hama
Issue Type: Bug
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Edward J. Yoon resolved HAMA-819.
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Resolution: Fixed
Assignee: Edward J. Yoon
Fixed.
Make number of RPC Server threads
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Edward J. Yoon updated HAMA-857:
Attachment: combine.patch
This patch combines the messages before sending to another peers
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Edward J. Yoon updated HAMA-857:
Attachment: HAMA-857_v02.patch
I'v added TOTAL_MESSAGES_COMBINED counter.
Graph Combiners
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Edward J. Yoon reassigned HAMA-857:
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Assignee: Edward J. Yoon
Graph Combiners is wrongly implemented
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Edward J. Yoon updated HAMA-857:
Status: Patch Available (was: Open)
With this, SSSP example's performance will be improved.
Graph
Edward J. Yoon created HAMA-858:
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Summary: Implement SortedDiskQueue
Key: HAMA-858
URL: https://issues.apache.org/jira/browse/HAMA-858
Project: Hama
Issue Type: Bug
Affects Versions: 0.6.3
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Edward J. Yoon updated HAMA-858:
Component/s: graph
bsp core
Implement SortedDiskQueue
Hi,
http://people.apache.org/~edwardyoon/site/index.html
Do you like this new logo?
If no objections arise, I'd like to commit this!
--
Best Regards, Edward J. Yoon
@eddieyoon
Edward J. Yoon created HAMA-855:
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Summary: Handling Address binding exceptions
Key: HAMA-855
URL: https://issues.apache.org/jira/browse/HAMA-855
Project: Hama
Issue Type: Bug
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https://issues.apache.org/jira/browse/HAMA-837?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Edward J. Yoon resolved HAMA-837.
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Resolution: Fixed
Fixed.
Add sort behaviour to runtime partitioner
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Edward J. Yoon resolved HAMA-845.
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Resolution: Fixed
Fixed.
The size() of Spilling Queue returns always numMessagesWritten
Edward J. Yoon created HAMA-856:
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Summary: Bundle Serialization
Key: HAMA-856
URL: https://issues.apache.org/jira/browse/HAMA-856
Project: Hama
Issue Type: Bug
Reporter: Edward J
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Edward J. Yoon updated HAMA-853:
Attachment: HAMA-853_v02.patch
This patch adds OutgoingMessageManager and removes some old codes
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Edward J. Yoon commented on HAMA-854:
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Currently, we already have a pluggable
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Edward J. Yoon commented on HAMA-854:
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And FYI,
Netty vs zeromq for storm -
http
/browse/HAMA-853
Project: Hama
Issue Type: Improvement
Components: bsp core
Affects Versions: 0.6.3
Reporter: Edward J. Yoon
Assignee: Edward J. Yoon
Fix For: 0.7.0
Attachments: outgoingmanager.patch
As we discussed
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Edward J. Yoon reassigned HAMA-853:
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Assignee: Edward J. Yoon
Outgoing message manager
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Edward J. Yoon updated HAMA-853:
Attachment: outgoingmanager.patch
I roughly wrote the code. Please review.
Outgoing message
in bundle object
directly, and should consider about byte array bundle, or disk-based
bundle. We can add something like OutgoingMessageManager.
Does it make sense?
On Wed, Jan 15, 2014 at 2:32 PM, Edward J. Yoon edwardy...@apache.org wrote:
As I described here,
http://wiki.apache.org/hama/Architecture
with 0.6.3 as well if I recall correctly.
Tommaso
2014/1/15 Edward J. Yoon edwardy...@apache.org
There are few implementations.
- ListVerticesinfo: loads vertices into array list.
- MapVerticesinfo: loads vertices into tree map.
- DiskVerticesInfo: loads vertices into a local file.
You can
Edward J. Yoon created HAMA-851:
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Summary: Add ByteArrayVerticesInfo
Key: HAMA-851
URL: https://issues.apache.org/jira/browse/HAMA-851
Project: Hama
Issue Type: New Feature
Affects
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Edward J. Yoon updated HAMA-851:
Fix Version/s: (was: 0.7.0)
Add ByteArrayVerticesInfo
in memory usage. Why
should we do like that?
Please let me know if i missing something important.
--
Best Regards, Edward J. Yoon
@eddieyoon
Edward J. Yoon created HAMA-845:
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Summary: The size() of Spilling Queue returns always
numMessagesWritten
Key: HAMA-845
URL: https://issues.apache.org/jira/browse/HAMA-845
Project: Hama
Issue
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https://issues.apache.org/jira/browse/HAMA-845?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13869359#comment-13869359
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Edward J. Yoon commented on HAMA-845:
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I'll commit directly without patch upload
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Edward J. Yoon commented on HAMA-845:
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Unit test also should be changed like:
{code
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Edward J. Yoon updated HAMA-845:
Affects Version/s: 0.6.3
The size() of Spilling Queue returns always numMessagesWritten
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Edward J. Yoon updated HAMA-845:
Component/s: bsp core
The size() of Spilling Queue returns always numMessagesWritten
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Edward J. Yoon reassigned HAMA-845:
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Assignee: Edward J. Yoon
The size() of Spilling Queue returns always numMessagesWritten
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https://issues.apache.org/jira/browse/HAMA-673?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13869369#comment-13869369
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Edward J. Yoon commented on HAMA-673:
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As I mentioned above, Current YARN module
Edward J. Yoon created HAMA-846:
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Summary: Renaming of HadoopMessageManager** classes
Key: HAMA-846
URL: https://issues.apache.org/jira/browse/HAMA-846
Project: Hama
Issue Type: Improvement
Edward J. Yoon created HAMA-847:
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Summary: Vertex should provide Counters
Key: HAMA-847
URL: https://issues.apache.org/jira/browse/HAMA-847
Project: Hama
Issue Type: Improvement
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https://issues.apache.org/jira/browse/HAMA-843?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Edward J. Yoon updated HAMA-843:
Resolution: Fixed
Status: Resolved (was: Patch Available)
I've committed this!
Message
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Edward J. Yoon updated HAMA-673:
Attachment: yarn-hama-diagram.pptx
See attached flow diagram.
And, I'll create a issue for you
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Edward J. Yoon resolved HAMA-673.
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Resolution: Won't Fix
I'll create a new ticket for YARN module.
Integrate new service layers
Edward J. Yoon created HAMA-848:
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Summary: Refactor YARN module for hadoop 2.x stable version
Key: HAMA-848
URL: https://issues.apache.org/jira/browse/HAMA-848
Project: Hama
Issue Type
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Edward J. Yoon commented on HAMA-673:
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If you want to work on YARN integration, please
Edward J. Yoon created HAMA-849:
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Summary: No need to use sorted queue for outgoingQueue
Key: HAMA-849
URL: https://issues.apache.org/jira/browse/HAMA-849
Project: Hama
Issue Type
Edward J. Yoon created HAMA-850:
---
Summary: Add ByteArrayQueue
Key: HAMA-850
URL: https://issues.apache.org/jira/browse/HAMA-850
Project: Hama
Issue Type: New Feature
Components: bsp
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Edward J. Yoon updated HAMA-849:
Status: Patch Available (was: Open)
No need to use sorted queue for outgoingQueue
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Edward J. Yoon updated HAMA-849:
Attachment: HAMA-849.patch
attach my patch.
No need to use sorted queue for outgoingQueue
?
Thanks.
--
Best Regards, Edward J. Yoon
@eddieyoon
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Edward J. Yoon commented on HAMA-673:
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Current YARN module was implemented based
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Edward J. Yoon commented on HAMA-842:
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BTW, I think we have to rename the Queue
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Edward J. Yoon updated HAMA-842:
Attachment: HAMA-842_v02.patch
attach my patch.
Add persistent queue option to JobConf
Edward J. Yoon created HAMA-844:
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Summary: Renaming queue implementations consistently
Key: HAMA-844
URL: https://issues.apache.org/jira/browse/HAMA-844
Project: Hama
Issue Type: Bug
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Edward J. Yoon resolved HAMA-842.
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Resolution: Fixed
I've commit this.
Add persistent queue option to JobConf
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Edward J. Yoon commented on HAMA-844:
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I'd like to rename like
in Eclipse?
Do anyone tell me in detail?
On Mon, Jan 13, 2014 at 8:17 AM, Edward J. Yoon edwardy...@apache.orgwrote:
There are two ways to configure the Hama properties.
HamaConfiguration conf = new HamaConfiguration(Path of hama-site.xml);
or,
conf.set(bsp.master.address, host1
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Edward J. Yoon updated HAMA-843:
Attachment: HAMA-843.patch
Attach my patch. This will improve the PageRank performance dramatically
time
with HAMA-816.
On Mon, Jan 13, 2014 at 1:14 AM, Tommaso Teofili
tommaso.teof...@gmail.com wrote:
by the way: is there anyone aware of what kind of failures were related to
PageRank failures highlighted in the mentioned slides (or know who can we
ask)?
Tommaso
2014/1/10 Edward J. Yoon
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Edward J. Yoon commented on HAMA-843:
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Here's PageRank performance test on 8 thousand
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Edward J. Yoon updated HAMA-843:
Status: Patch Available (was: Open)
Message communication overhead between master aggregation
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Edward J. Yoon updated HAMA-842:
Attachment: HAMA-842_v01.patch
Attach my progress.
I'll update for DiskQueue and Sorted Spilling
/browse/HAMA
3. http://wiki.apache.org/hama/HowToContribute
On Fri, Jan 10, 2014 at 5:06 PM, song bai baison...@gmail.com wrote:
Dear Edward J. Yoon
I have read and modify most of source code of hama-0.6.0, for example,
1. add combiner when the peer sends messages to other peers;
2. the messages
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Edward J. Yoon commented on HAMA-839:
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I can review tonight or tomorrow morning
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Edward J. Yoon commented on HAMA-839:
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+1
Support NullWritable in Hama Pipes
queue.
If there are no feedbacks, I'll close the HAMA-734 as a invalid and
start to work on Queue implementations.
--
Best Regards, Edward J. Yoon
@eddieyoon
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Edward J. Yoon commented on HAMA-834:
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Nice, +1
Fix KMeans example
Just FYI,
https://cs.uwaterloo.ca/~kdaudjee/courses/cs848/slides/proj/F13/JPV.pdf
--
Best Regards, Edward J. Yoon
@eddieyoon
Edward J. Yoon created HAMA-842:
---
Summary: Add persistent queue option to JobConf
Key: HAMA-842
URL: https://issues.apache.org/jira/browse/HAMA-842
Project: Hama
Issue Type: New Feature
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Edward J. Yoon commented on HAMA-842:
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To reduce the number of additions, we have
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Edward J. Yoon resolved HAMA-734.
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Resolution: Invalid
Hama Message Manager should be able to delegate the ownership of internal
Edward J. Yoon created HAMA-843:
---
Summary: Message communication overhead between master aggregation
and vertex computation supersteps
Key: HAMA-843
URL: https://issues.apache.org/jira/browse/HAMA-843
Edward J. Yoon created HAMA-840:
---
Summary: Improve the dynamic graph example
Key: HAMA-840
URL: https://issues.apache.org/jira/browse/HAMA-840
Project: Hama
Issue Type: Improvement
Affects
Edward J. Yoon created HAMA-841:
---
Summary: Documentation about verticesInfo implementations
Key: HAMA-841
URL: https://issues.apache.org/jira/browse/HAMA-841
Project: Hama
Issue Type: Task
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Edward J. Yoon updated HAMA-734:
Component/s: bsp core
Hama Message Manager should be able to delegate the ownership of internal
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Edward J. Yoon updated HAMA-734:
Priority: Critical (was: Major)
Hama Message Manager should be able to delegate the ownership
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https://issues.apache.org/jira/browse/HAMA-838?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13866154#comment-13866154
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Edward J. Yoon commented on HAMA-838:
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I've refactored pagerank example's compute() code
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Edward J. Yoon updated HAMA-838:
Status: In Progress (was: Patch Available)
I just committed this. Thanks for your nice patch
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Edward J. Yoon resolved HAMA-838.
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Resolution: Fixed
Add custom aggregators
--
Key: HAMA-838
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Edward J. Yoon commented on HAMA-838:
-
{quote}
As I can see in Apache Giraph
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Edward J. Yoon commented on HAMA-837:
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Found a bug in SemiClustering. In below case
and random
access by vertex ID. But this implementation might be inefficient in
memory usage.
4) Fixed trivial bugs.
My next steps are:
- Message Serialization.
- Refactoring Queues and implement TODO things.
- (Graph package) Performance Improvement.
Thanks.
--
Best Regards, Edward J. Yoon
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Edward J. Yoon resolved HAMA-783.
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Resolution: Fixed
This issue has been fixed.
To choose the default one, I'll attach
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Edward J. Yoon commented on HAMA-783:
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Once HAMA-837 is done, we can enable
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https://issues.apache.org/jira/browse/HAMA-783?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanelfocusedCommentId=13862846#comment-13862846
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Edward J. Yoon commented on HAMA-783:
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{quote}Putting this function to Partitioning
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https://issues.apache.org/jira/browse/HAMA-837?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Edward J. Yoon updated HAMA-837:
Attachment: HAMA-837_v01.patch
Attach my progress.
Add sort behaviour to runtime partitioner
as it is?
Cheers,
Anastasis
--
Best Regards, Edward J. Yoon
@eddieyoon
to delete the previous aggregators entirely? I thought we
are keeping the old way and also add the new aggregators on top.
On 6 Ιαν 2014, at 3:05 μ.μ., Edward J. Yoon edwardy...@apache.org wrote:
We don't need to think about it if we introduce new aggregators
interface - HAMA-838 - and get rid
the default one should be the current behavior as it doesn't make
sense (to me) to aggregate data for halted vertices (and as far as I know
in line with Pregel design).
My 2 cents,
Tommaso
2014/1/6 Edward J. Yoon edwardy...@apache.org
Oh, we are going to delete the previous aggregators entirely
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https://issues.apache.org/jira/browse/HAMA-837?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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Edward J. Yoon updated HAMA-837:
Attachment: HAMA-837_v02.patch
This patch adds sort option and enables the DiskVerticesInfo. Each
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