Re: [O] org-ref in action

2014-06-27 Thread Alan Schmitt
On 2014-06-26 20:44, Matt Lundin m...@imapmail.org writes: Alan Schmitt alan.schm...@polytechnique.org writes: On 2014-06-26 16:39, Matt Lundin m...@imapmail.org writes: By contrast, ox-bibtex.el runs citations through bibtex2html, which is pretty much limited to the old-fashioned bibtex

Re: [O] org-ref in action

2014-06-27 Thread Joseph Vidal-Rosset
Hello Jonhn, hello the list, I have already used org-bibtex (and ox-bibtex) and I have just tried to use org-ref . Is it possible that a conflict exists between the former(s) and the latter? My links for example are not clickable and the link to the default bibliography does not work at all...

Re: [O] org-ref in action

2014-06-27 Thread Thomas S. Dye
Aloha Xebar, Xebar Saram zelt...@gmail.com writes: Hi all off topic a bit again. im an academic (asst. prof) in Epidemiology and have been using org-mode for about a year now. i love using org but im really not very technical at all. it has always been a dream for me to ditch word and move

Re: [O] org-ref in action

2014-06-27 Thread Vikas Rawal
off topic a bit again. im an academic (asst. prof) in Epidemiology and have been using org-mode for about a year now. i love using org but im really not very technical at all. it has always been a dream for me to ditch word and move over to Latex and even better orgmode to write my

Re: [O] org-ref in action

2014-06-27 Thread Melleus
Very useful guide. Thank you.

Re: [O] Printing org file in color

2014-06-27 Thread Chris Henderson
On Wed, Jun 25, 2014 at 6:25 PM, Bastien b...@gnu.org wrote: Hi Chris, Chris Henderson henders...@gmail.com writes: I'd like to print out my org file in expanded mode in color. How do I do that? I suggest M-x htmlize-buffer RET then printing from your web browser. I can't find

[O] org-reftex-citation

2014-06-27 Thread Fabrice Popineau
In org.el:org-reftex-citation(), reftex-cite-format is explicitly set to its default value. Doesn't that prevent any attempt to override it ? -- Fabrice

Re: [O] BUG variable expansion with table

2014-06-27 Thread Rainer M Krug
Andreas Leha andreas.l...@med.uni-goettingen.de writes: Hi Rainer, Rainer M Krug rai...@krugs.de writes: Hi there seems to be a bug in the table transfer. The org file below evaluates as shown, i.e. the TABLE_BLOCK contains one column less then it should as the first column is discarded

Re: [O] results from Python block not visible

2014-06-27 Thread Daniel Clemente
I confirm that with Debian's Emacs, org-babel works well after the (require 'tramp-cache): GNU Emacs 24.3.1 (x86_64-pc-linux-gnu, GTK+ Version 3.12.2) of 2014-06-06 on barber, modified by Debian But it fails with my compiled one from 2014-06-20. So is it because of tramp-cache or org-babel? On

Re: [O] Using #+NAME for single value, not table?

2014-06-27 Thread Rainer M Krug
t...@tsdye.com (Thomas S. Dye) writes: Aloha Rainer, Rainer M Krug rai...@krugs.de writes: Hi I use #+NAME to define some parameters for my analysis, which works quite nice for tables. but I would now like to use the same apprioach for values, e.g. a single number, but I don't manage. Is

[O] Bug: [regression] superscript not available after non-alphanumeric [8.2.7b (8.2.7b-dist @ /home/benda/gnto/usr/share/emacs/site-lisp/org-mode/)]

2014-06-27 Thread heroxbd
superscript after non-alphanumeric, primarily used for isotopes, is broken again[1, 2]. #+begin_org \ce{^{238}U}, ^2H #+end_org is exported as #+begin_latex \ce\{$^{\text{238}}$U\}, \^{}2H #+end_latex on org-mode 8.2.7b I've also tried 8.0.7, the bug persists. So I suppose the regression

[O] How to use jsMath with org-mode

2014-06-27 Thread Joseph Vidal-Rosset
http://orgmode.org/worg/org-tutorials/org-jsmath.html Hello the list, I have followed this tutorial, but unfortunately, I do not understand why the command \ref meets always the error message : Undefined control sequence . I do not succed to get on html page references to numbered equations.

Re: [O] Bug: [regression] superscript not available after non-alphanumeric [8.2.7b (8.2.7b-dist @ /home/benda/gnto/usr/share/emacs/site-lisp/org-mode/)]

2014-06-27 Thread Nicolas Goaziou
Hello, hero...@gentoo.org writes: #+begin_org \ce{^{238}U}, ^2H #+end_org is exported as #+begin_latex \ce\{$^{\text{238}}$U\}, \^{}2H #+end_latex on org-mode 8.2.7b If you want to insert raw LaTeX in an Org buffer, then \ce{^{238}U} is invalid because you cannot nest braces. You

Re: [O] How to use jsMath with org-mode

2014-06-27 Thread Joseph Vidal-Rosset
2014-06-27 12:58 GMT+02:00 Joseph Vidal-Rosset joseph.vidal.ros...@gmail.com: http://orgmode.org/worg/org-tutorials/org-jsmath.html Hello the list, I have followed this tutorial, but unfortunately, I do not understand why the command \ref meets always the error message : Undefined control

[O] Wir erwarten Ihre Antwort.

2014-06-27 Thread Altura Credit Union
-- preAttn: Hallo! Ich bin ein berechtigtes Darlehen Agent Larry Faith von Altura Credit Union Management; Wir bieten Finanzierungslouml;sungen fuuml;r Unternehmen und hart arbeiten, um unsere Kunden zu gewauml;hrleisten, die richtige Entscheidung daruuml;ber, die welche Anlage am besten

[O] cannot export to openoffice

2014-06-27 Thread Luca Ferrari
Hi all, I'm running emacs 24.3.1 on Linux, and I've LibreOffice installed. When trying to export an org buffer (C-c C-e) I don't have any OpenDocument option. I've checked and I've the zip command on my path. What else should I check? Thanks, Luca

Re: [O] cannot export to openoffice

2014-06-27 Thread Nicolas Goaziou
Hello, Luca Ferrari fluca1...@gmail.com writes: I'm running emacs 24.3.1 on Linux, and I've LibreOffice installed. When trying to export an org buffer (C-c C-e) I don't have any OpenDocument option. Export to ODT is not loaded by default. See variable `org-export-backends'. Regards, --

Re: [O] org-weather for openweathermap.org

2014-06-27 Thread Andreas Leha
Hi Rüdiger, Rüdiger Sonderfeld ruedi...@c-plusplus.de writes: Hi, On Saturday 14 June 2014 15:11:21 Chris Raschl wrote: recently I wanted to add a weather forecast to my org-agenda. I found org-google-weather, but this package is obsolete since 2012, because the API is not available any

Re: [O] still seeing semi-regular lockups

2014-06-27 Thread Nicolas Goaziou
Hello, Matt Lundin m...@imapmail.org writes: With killall -USR2 emacs, the following backtrace popped up, which highlights flyspell as the culrpit. Note: I have flyspell turned on in all text buffers, but I have (for several months) only experienced lockups when using org-mode. I spend more

Re: [O] still seeing semi-regular lockups

2014-06-27 Thread Nicolas Goaziou
Hello, Sebastien Vauban sva-news-D0wtAvR13HarG/idocf...@public.gmane.org writes: I also still experience semi-regular Emacs infloops, particularly when editing clocking entries manually (with the arrow keys), in the LOGBOOK drawer. It's quite often in such a situation, though not 100%

[O] make vanilla not working on OSX?

2014-06-27 Thread Rainer M Krug
Hi I am using emacs-mac from homebrew (on OSX obviously) and I would like to test some things using ~make vanilla~. I assume that when I run ~make vanilla~ in the org-git directory, an emacs instance starts with only the version of org in the directory loaded? But when I execute make vanilla, I

Re: [O] still seeing semi-regular lockups

2014-06-27 Thread Alan Schmitt
I've also just been bitten by this bug, as I was doing my weekly review. I'll try to see if I can write an ECM, but for the record this is what I was doing: I was in an agenda view sorted by the value of a LAST_REVIEW property, and I was repeatedly calling this function on the entries of the view:

Re: [O] org-ref in action

2014-06-27 Thread Ista Zahn
Yes, totally off topic for this thread, please start a new one. On Fri, Jun 27, 2014 at 12:27 AM, Xebar Saram zelt...@gmail.com wrote: Hi all off topic a bit again. im an academic (asst. prof) in Epidemiology and have been using org-mode for about a year now. i love using org but im really

Re: [O] org-ref in action

2014-06-27 Thread Matt Lundin
Alan Schmitt alan.schm...@polytechnique.org writes: On 2014-06-26 20:44, Matt Lundin m...@imapmail.org writes: I don't think this is possible without some major hacking/conversion/filtering. Biblatex has many more entry types and fields than bibtex. I've found that most of the older bibtex

Re: [O] How to use jsMath with org-mode

2014-06-27 Thread John Hendy
On Fri, Jun 27, 2014 at 7:23 AM, Joseph Vidal-Rosset joseph.vidal.ros...@gmail.com wrote: 2014-06-27 12:58 GMT+02:00 Joseph Vidal-Rosset joseph.vidal.ros...@gmail.com: http://orgmode.org/worg/org-tutorials/org-jsmath.html Hello the list, I have followed this tutorial, but unfortunately, I

[O] MathJax SVG

2014-06-27 Thread John Tait
Hi I'd like to use org-mode and MathJax to produce maths in SVG format. MathJax's CSS maths is wonderful but I need SVG for a specific purpose (printing). If I have a simple file like below, can I configure MathJax to render SVG? Thanks John #+TITLE: Maths test #+LATEX_HEADER:

Re: [O] Printing org file in color

2014-06-27 Thread Nick Dokos
Chris Henderson henders...@gmail.com writes: On Wed, Jun 25, 2014 at 6:25 PM, Bastien b...@gnu.org wrote: Hi Chris, Chris Henderson henders...@gmail.com writes: I'd like to print out my org file in expanded mode in color. How do I do that? I suggest M-x

Re: [O] Using #+NAME for single value, not table?

2014-06-27 Thread Nick Dokos
Rainer M Krug rai...@krugs.de writes: t...@tsdye.com (Thomas S. Dye) writes: Perhaps you could wrap it in a source code block? Thanks - yes, I could do that, but then it is not equivalent to a table, as I have to use VARIABLEVALUE() and for a table VARIABLETABLE. I actually wanted to get

Re: [O] org-ref in action

2014-06-27 Thread Grant Rettke
Thanks for your answer on that everybody. My apologies for my poor grammar asking where people discuss such questions in real life. What I really had wanted to say, what I meant, was that I was wondering what professions utilize such workflows and where they discuss it primarily because the topic

Re: [O] MathJax SVG

2014-06-27 Thread Nick Dokos
John Tait johngt...@gmail.com writes: Hi I'd like to use org-mode and MathJax to produce maths in SVG format.  MathJax's CSS maths is wonderful but I need SVG for a specific purpose (printing). If I have a simple file like below, can I configure MathJax to render SVG? Haven't tried but

Re: [O] org-article.cls generated empty after tangling

2014-06-27 Thread Thomas S. Dye
Aloha Onur, Onur Solmaz onursol...@gmail.com writes: Ah, so this example is for org-mode 8? http://orgmode.org/worg/org-contrib/babel/examples/article-class.html I got confused because on some sites, it explicitly says for version 8, like this one:

[O] agenda htmlize-buffer exception

2014-06-27 Thread Rainer Stengele
Hi. Trying to htmlize my org agenda buffer stops with exception below. I cannot understand the reason. I use zenburn color-theme. org-priority-faces is a variable defined in `org-faces.el'. Its value is ((67 . #7cb8bb) (66 . #bfebbf) (65 . cornflowerblue) (68 . grey) (69 . grey) (70 .

Re: [O] org-ref in action

2014-06-27 Thread Matt Lundin
Matt Lundin m...@imapmail.org writes: Alan Schmitt alan.schm...@polytechnique.org writes: You are right. I see that one can specify a style file for parsing bib files and biblatex does supply a biblatex.bst, e.g., bibtex2html -s biblatex However, this still produces errors (and a blank

[O] R src block not highlighted in pdf

2014-06-27 Thread Shiyuan
Hi, I have a R code src block in a org file. When exported to html, the R code is correctly syntax highlighted. But when exported to pdf(latex), the R code is not highlighted. I found this thread https://lists.gnu.org/archive/html/emacs-orgmode/2010-07/msg00379.html

Re: [O] Using #+NAME for single value, not table?

2014-06-27 Thread Aaron Ecay
Hi Rainer, 2014ko ekainak 26an, Rainer M Krug-ek idatzi zuen: Hi I use #+NAME to define some parameters for my analysis, which works quite nice for tables. but I would now like to use the same apprioach for values, e.g. a single number, but I don't manage. Is this possible? For

Re: [O] Using #+NAME for single value, not table?

2014-06-27 Thread Grant Rettke
On Fri, Jun 27, 2014 at 12:38 PM, Aaron Ecay aarone...@gmail.com wrote: You can use a verbatim block: , | #+name: xyz | : hi | | #+begin_src emacs-lisp :var abc=xyz | (concat * abc *) | #+end_src | | #+RESULTS: | : *hi* ` Is that similar to (setq xyz hi)?

Re: [O] R src block not highlighted in pdf

2014-06-27 Thread Grant Rettke
Just ran apropos and it looks like org-latex-listings might be the one. Grant Rettke | ACM, ASA, FSF, IEEE, SIAM g...@wisdomandwonder.com | http://www.wisdomandwonder.com/ “Wisdom begins in wonder.” --Socrates ((λ (x) (x x)) (λ (x) (x x))) “Life has become immeasurably better since I have been

Re: [O] R src block not highlighted in pdf

2014-06-27 Thread Thomas S. Dye
Aloha Shiyuan, Shiyuan gshy2...@gmail.com writes: Hi, I have a R code src block in a org file. When exported to html, the R code is correctly syntax highlighted. But when exported to pdf(latex), the R code is not highlighted. I found this thread

[O] PDF output from Org

2014-06-27 Thread David Masterson
Hi, I'm doing my first paper in Org and outputting it to PDF. So far, it's been pretty easy and the results look quite good. The one issue that I'm wondering about is page setup. The output looks like it was done with ~2.5 margins all around which means that, on an 8.5x11 paper, almost 5 is

Re: [O] PDF output from Org

2014-06-27 Thread John Hendy
Greetings, Did you try searching for this? - http://lmgtfy.com/?q=latex+pdf+margins+orgmode To be fair, Orgmode has a default LaTeX article class, so you'd really want to be searching for how to change LaTeX margins. Find the option you want and put that into your Org document with

[O] Publishing sitemap

2014-06-27 Thread John Tait
In a similar vein, is is possible to export (say) HTML from org with an index without a formal publishing project?

Re: [O] R src block not highlighted in pdf

2014-06-27 Thread Shiyuan
I use the following setting. The keywords are correctly recognized and are in bold face, but not in color. Are there any other steps for colors. (require 'ox-latex) (add-to-list 'org-latex-packages-alist '( listings)) (add-to-list 'org-latex-packages-alist '( color)) Also, thank you for

Re: [O] still seeing semi-regular lockups

2014-06-27 Thread Nicolas Goaziou
Hello, Alan Schmitt alan.schm...@polytechnique.org writes: I've also just been bitten by this bug, as I was doing my weekly review. I'll try to see if I can write an ECM, but for the record this is what I was doing: I was in an agenda view sorted by the value of a LAST_REVIEW property, and I

Re: [O] R src block not highlighted in pdf

2014-06-27 Thread Nick Dokos
Shiyuan gshy2...@gmail.com writes: I use the following setting. The keywords are correctly recognized and are in bold face, but not in color. Are there any other steps for colors.  (require 'ox-latex)   (add-to-list 'org-latex-packages-alist '( listings))   (add-to-list

Re: [O] org-ref in action

2014-06-27 Thread John Kitchin
You may find some information here: https://github.com/jkitchin/jmax/tree/master/examples that is helpful to you. i have collected some examples for various journals we have published in with orgmode there. The jmax repo is what my group currently uses for this purpose. It may not be what you want

[O] syntax specification (was Re: Bug: [regression] superscript not available after non-alphanumeric)

2014-06-27 Thread heroxbd
Hi Nicolas, Nicolas Goaziou m...@nicolasgoaziou.fr writes: If you want to insert raw LaTeX in an Org buffer, then \ce{^{238}U} is invalid because you cannot nest braces. You can write instead: @@latex:\ce{^{238}U}@@ or you can define a macro, e.g.,: #+MACRO: ce @@latex:\ce{$1}@@