[Orgmode] make update error

2009-08-31 Thread Thomas S. Dye
Aloha all, Apologies in advance for a question well below the prevailing software expertise on this list and somewhat off topic. I looked around for an answer to this with no luck. I'm trying to update the org-mode installation on my Mac, like this: sudo make update git pull counts,

[Orgmode] Re: make update error

2009-09-01 Thread Thomas S. Dye
On Sep 1, 2009, at 4:07 AM, Bernt Hansen wrote: Nick Dokos nicholas.do...@hp.com writes: Thomas S. Dye t...@tsdye.com wrote: git pull counts, compresses, receives objects, resolves deltas, updates and fails with this message: error: Entry 'Makefile' not uptodate. Cannot merge. As far as I

[Orgmode] Unnumbered sections in LaTeX export

2009-09-13 Thread Thomas S. Dye
Aloha all, The variable org-export-latex-classes has a specification for unnumbered sections but I haven't found any documentation how to mark up the org file to activate them. I might have missed something obvious. Could someone give me a pointer to documentation or some help how to

Re: [Orgmode] Unnumbered sections in LaTeX export

2009-09-15 Thread Thomas S. Dye
On Sep 14, 2009, at 5:34 PM, Sebastian Rose wrote: Thomas S. Dye t...@tsdye.com writes: On Sep 14, 2009, at 10:21 AM, Sebastian Rose wrote: Thomas S. Dye t...@tsdye.com writes: Aloha all, The variable org-export-latex-classes has a specification for unnumbered sections but I haven't

Re: [Orgmode] Unnumbered sections in LaTeX export

2009-09-15 Thread Thomas S. Dye
On Sep 15, 2009, at 7:42 AM, Sebastian Rose wrote: Thomas S. Dye t...@tsdye.com writes: Thanks Sebastian. I appreciate the expert assistance. I have a simple export to Beamer working and was trying to implement automatic export of columns, too. The starred sections were going

Re: [Orgmode] Unnumbered sections in LaTeX export

2009-09-19 Thread Thomas S. Dye
a clever combination of org-export-latex-low-levels and org- export=headline-levels? - Carsten On Sep 15, 2009, at 11:04 PM, Thomas S. Dye wrote: On Sep 15, 2009, at 7:42 AM, Sebastian Rose wrote: Thomas S. Dye t...@tsdye.com writes: Thanks Sebastian. I appreciate the expert assistance. I have

Re: Export to LaTeX Beamer. [WAS: Re: [Orgmode] Re: LaTeX export bugs?]

2009-09-20 Thread Thomas S. Dye
On Sep 19, 2009, at 8:03 PM, Alan E. Davis wrote: Hello: I was happy to see a simple formula for exporting to Beamer. The following worked initially. However, this initialization routine was able to run only when org-latex had already been loaded. On Sat, Jul 4, 2009 at 2:52 AM, Nick

[Orgmode] Superscripts in LaTeX export

2009-09-27 Thread Thomas S. Dye
Aloha all, I'm trying to generate $^{14}$C, or an equivalent, from org-mode to represent the isotope of carbon important in archaeological dating. Reading the manual, I tried this: ** A Brief History of Attempts to Interpret the ^{14}C Dates *** The ^{14}C Dates Which, in my #+LaTeX_CLASS:

Re: [Orgmode] Superscripts in LaTeX export

2009-09-28 Thread Thomas S. Dye
, thanks. - Carsten On Sep 27, 2009, at 10:20 PM, Thomas S. Dye wrote: Aloha all, I'm trying to generate $^{14}$C, or an equivalent, from org-mode to represent the isotope of carbon important in archaeological dating. Reading the manual, I tried this: ** A Brief History of Attempts

[Orgmode] Multiple publishing projects

2009-10-06 Thread Thomas S. Dye
. If someone can offer an example, or a pointer to an example I've overlooked, I'll be appreciative. All the best, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com

Re: [Orgmode] Multiple publishing projects

2009-10-06 Thread Thomas S. Dye
Thanks Ian. Your example helped me make sense of the Org manual, which was a bit terse for my comprehension in this instance. My second publishing project is up and running now and I'm looking forward to the third. All the best, Tom On Oct 6, 2009, at 12:05 AM, Ian Barton wrote:

[Orgmode] [babel] language support

2009-10-17 Thread Thomas S. Dye
}. ... #+end_src #+srcname: beamer-presentation #+begin_src latex :tangle beamer-thesis :exports none # beamer-idea-1 # beamer-idea-2 ... #+end_src #+srcname: latex-presentation #+begin_src latex :tangle latex-thesis :exports none # latex-idea-1 # latex-idea-2 ... #+end_src Tom Thomas S. Dye, Ph.D

Re: [Orgmode] [babel] language support

2009-10-17 Thread Thomas S. Dye
, especially in comparison to the capabilities of others on this list, and comments or suggestions are most welcome. All the best, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com On Oct 17, 2009, at 8:41 AM, Eric

[Orgmode] [babel] :session

2009-10-18 Thread Thomas S. Dye
, many possibilities ... Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com ___ Emacs-orgmode mailing list Remember: use `Reply All' to send replies to the list. Emacs-orgmode

[Orgmode] [babel] noweb for :sessions?

2009-10-19 Thread Thomas S. Dye
, password=password, dbname=db_name, host=host_name) #+end_src #+srcname: r-query #+begin_src R :session session-1 # r-connect res - dbGetQuery(con, select * from table_name where 1) #+end_src Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529

Re: [Orgmode] [babel] noweb for :sessions?

2009-10-19 Thread Thomas S. Dye
Hi Eric, Yes, I think that's it. I appreciate your help. org-babel has me feeling like a kid at Christmas. Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com On Oct 19, 2009, at 8:15 AM, Eric Schulte wrote

[Orgmode] [babel] :noweb and R

2009-10-19 Thread Thomas S. Dye
in the 2nd block funcall: Symbol's function definition is void: R-mode: #+srcname: noweb-example #+begin_src R a - 28 a #+end_src #+resname: noweb-example : 28 #+begin_src R :noweb # noweb-example b - a + 4 b #+end_src The first block works fine for R. Tom Thomas S. Dye, Ph.D. T. S. Dye

Re: [babel][Orgmode] Subtree exporting to different LaTeX_CLASS

2009-10-22 Thread Thomas S. Dye
blocks tracks what I hope to achieve, decisions I've made, etc. and uses the export facilities of org-mode to create a user manual for my employees. Right now I'm targeting html for the user manual, but LaTeX export would also work. HTH, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues

Re: [babel][Orgmode] Subtree exporting to different LaTeX_CLASS

2009-10-23 Thread Thomas S. Dye
. HTH, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com On Oct 23, 2009, at 2:48 AM, JBash wrote: Tom, Thanks very much for pointing this out. I had not taken the time to investigate org-babel up to now. I

Re: [babel][Orgmode] Subtree exporting to different LaTeX_CLASS

2009-10-23 Thread Thomas S. Dye
Jerry, I forgot to mention a setup step. You'll need this in .emacs to register LaTeX as a source language in org-babel. (org-babel-add-interpreter latex) (add-to-list 'org-babel-tangle-langs '(latex tex)) HTH, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone

Re: [Orgmode] org-babel: Meta-LaTeX-Python-Environment

2009-10-27 Thread Thomas S. Dye
On Oct 26, 2009, at 2:24 PM, Dan Davison wrote: Torsten Wagner torsten.wag...@gmail.com writes: ... ... The inline code blocks will not be processed inside source blocks. I'm not sure how to achieve what you want with the current machinery, but have you read the recent posts by Thomas

Re: [Orgmode] org-babel: Meta-LaTeX-Python-Environment

2009-10-27 Thread Thomas S. Dye
On Oct 27, 2009, at 12:55 PM, Eric Schulte wrote: Torsten Wagner torsten.wag...@gmail.com writes: Perhaps this will do what you want? When I run org-babel-tangle on the following org file, and then LaTeX the output, the resulting pdf file says: A bit of LATEX code, with the result:

Re: [Orgmode] org-babel: Meta-LaTeX-Python-Environment

2009-10-28 Thread Thomas S. Dye
On Oct 28, 2009, at 5:19 AM, Eric Schulte wrote: I see, you are using the org-mode file a level above the direct export. Maybe another option here would be to tag headlines based on which export target they are included within, and then base your exports on the headline tags (using

[babel] Re: [Orgmode] org-babel: Meta-LaTeX-Python-Environment

2009-10-28 Thread Thomas S. Dye
On Oct 28, 2009, at 6:10 AM, Dan Davison wrote: Dear thread participants, please note that we were breaking the rule of prepending the subject line with the string [babel]! One question inline below. Eric Schulte schulte.e...@gmail.com writes: Thomas S. Dye t...@tsdye.com writes

Re: [Orgmode] Differences html/pdf

2009-10-28 Thread Thomas S. Dye
On Oct 28, 2009, at 6:26 AM, Bastien wrote: Carsten Dominik carsten.domi...@gmail.com writes: In the latex version they're not exported for some reasons... That is correct, we have not implemented keeping all line breaks in LaTeX. I've searched around a bit, and to my big surprise, I

Re: [babel] Re: [Orgmode] org-babel: Meta-LaTeX-Python-Environment

2009-10-28 Thread Thomas S. Dye
On Oct 28, 2009, at 7:15 AM, Eric Schulte wrote: Thomas S. Dye t...@tsdye.com writes: On Oct 28, 2009, at 6:10 AM, Dan Davison wrote: Am I right in thinking that one issue remaining in this thread is that we currently have no means of tangling the output of org-babel- latex? Thus

Re: [babel] Re: [Orgmode] org-babel: Meta-LaTeX-Python-Environment

2009-10-29 Thread Thomas S. Dye
On Oct 28, 2009, at 12:19 PM, Eric Schulte wrote: Thomas S. Dye t...@tsdye.com writes: [...] Eric, I think Torsten has a clearer idea than I do about what kinds of programming structures might be appropriate here, but your suggestion looks to me like an elegant replacement for the file

[Orgmode] [babel] noweb syntax

2009-10-31 Thread Thomas S. Dye
/903_adzes/org-babel/test-babel.org::*test] [block-1]] This is tangled 1, but so this is. This is tangled 1, and so is this 2. % block-1 ends here All the best, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com

[Orgmode] [babel] noweb expansion in latex source blocks

2009-10-31 Thread Thomas S. Dye
Aloha all, Noweb expansion in latex source blocks inserts spaces that can introduce unwanted paragraph breaks in LaTeX. The outer-block in this org file looks like something that should be set as one paragraph in LaTeX. * noweb expansion #+srcname: outer-block #+begin_src latex :tangle

Re: [Orgmode] [babel] noweb expansion in latex source blocks

2009-11-01 Thread Thomas S. Dye
On Nov 1, 2009, at 9:47 AM, Dan Davison wrote: Thomas S. Dye t...@tsdye.com writes: Aloha all, Noweb expansion in latex source blocks inserts spaces that can introduce unwanted paragraph breaks in LaTeX. Hi Tom, I've just fixed this issue and the other one you posted, regarding multiple

[Orgmode] [babel] noweb expansion of LaTeX output from R

2009-11-01 Thread Thomas S. Dye
Aloha all, Is it possible to use the noweb syntax to pass LaTeX output from R into a latex source block? I thought this would work, but the noweb expansion yields nil. Please note that this is just a question and not a request for a change to org-babel. In this particular case, the

Re: [Orgmode] [babel] noweb expansion of LaTeX output from R

2009-11-01 Thread Thomas S. Dye
On Nov 1, 2009, at 1:42 PM, Dan Davison wrote: Thomas S. Dye t...@tsdye.com writes: On Nov 1, 2009, at 12:24 PM, Dan Davison wrote: Thomas S. Dye t...@tsdye.com writes: Aloha all, Is it possible to use the noweb syntax to pass LaTeX output from R into a latex source block? I thought

Re: [Orgmode] [babel] noweb expansion of LaTeX output from R

2009-11-01 Thread Thomas S. Dye
On Nov 1, 2009, at 1:42 PM, Dan Davison wrote: Thomas S. Dye t...@tsdye.com writes: On Nov 1, 2009, at 12:24 PM, Dan Davison wrote: Thomas S. Dye t...@tsdye.com writes: Aloha all, Is it possible to use the noweb syntax to pass LaTeX output from R into a latex source block? I thought

[Orgmode] [babel] Uses for :session buffers

2009-11-04 Thread Thomas S. Dye
. I'm wondering: do other org-babelers use the :session buffer? How? For what purpose? Any tips or advice will be appreciated. All the best, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com

Re: [Orgmode] [babel] Uses for :session buffers

2009-11-04 Thread Thomas S. Dye
On Nov 4, 2009, at 10:44 AM, Stephan Schmitt wrote: Thomas S. Dye wrote: Aloha all, I'm trying to comprehend the possibilities created by org-babel, and would like to draw on the experience of others if I could. I recently discovered the buffer created by :session. In my case

Re: [Orgmode] [babel] Uses for :session buffers

2009-11-04 Thread Thomas S. Dye
On Nov 4, 2009, at 12:02 PM, Dan Davison wrote: Stephan Schmitt drmab...@cs.tu-berlin.de writes: Thomas S. Dye wrote: Aloha all, I'm trying to comprehend the possibilities created by org-babel, and would like to draw on the experience of others if I could. I recently discovered the buffer

[Orgmode] [babel] :noweb

2009-11-08 Thread Thomas S. Dye
a warning or an error in this circumstance? All the best, Tom - * noweb #+begin_src R :noweb :session noweb foo bar #+end_src #+resname: : 2 #+srcname: bar #+begin_src R 2 #+end_src - Thomas S. Dye, Ph.D. T. S. Dye Colleagues

Re: [Orgmode][babel] noweb does not work (as expected)

2009-11-08 Thread Thomas S. Dye
if this is the best way to accomplish this, or if it is what you are trying to achieve at the moment. But, it looks to me as if you might want to :noweb instead of :tangle and perhaps establish a :session in case your source blocks need to communicate with one another. HTH, Tom Thomas S

Re: [Orgmode][babel] noweb does not work (as expected)

2009-11-09 Thread Thomas S. Dye
On Nov 8, 2009, at 9:38 PM, Torsten Wagner wrote: Hi Tom, If I try to use the noweb way, I always got error messages which tells me that org-babel can not read the result correctly #+srcname: r-load-libraries #+begin_src R library(RMySQL) library(reshape) library(xtable) #+end_src

Re: [Orgmode] latex export and beamer columns

2009-11-21 Thread Thomas S. Dye
On Nov 21, 2009, at 2:49 AM, Eric S Fraga wrote: Recently, in September, there was a discussion about exporting org files to latex using the beamer class and generating slides with multiple columns: http://article.gmane.org/gmane.emacs.orgmode/17546 No solution was presented at that time but

[Orgmode] [babel] editing LaTeX source code blocks

2009-11-23 Thread Thomas S. Dye
a choice of which one to search for label definitions. There are easy workarounds for this, so it isn't a big deal. It would be deluxe to leverage the full power of reftex while editing org-babel LaTeX source code blocks, though. All the best, Tom Thomas S. Dye, Ph.D. T. S. Dye

Re: [Orgmode] Beamer support in Org-mode

2009-11-26 Thread Thomas S. Dye
Hi Carsten, On Nov 26, 2009, at 1:17 AM, Carsten Dominik wrote: Hi, this is in response to the discussions about beamer export from Org-mode. Yesterday I had a long train ride during which I scanned the beamer documentation (smoking hot stuff!). Then I made the attached draft for Org-mode

[Orgmode] beamer columns

2009-11-29 Thread Thomas S. Dye
Aloha all, Would it make sense to implement Beamer columns with Org-mode tables? All the best, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com ___ Emacs-orgmode

Re: [Orgmode] beamer columns

2009-11-29 Thread Thomas S. Dye
On Nov 29, 2009, at 11:23 AM, Carsten Dominik wrote: On Nov 29, 2009, at 7:31 PM, Thomas S. Dye wrote: Aloha all, Would it make sense to implement Beamer columns with Org-mode tables? Hi Thomas, I cannot see how this would make sense. Maybe you'd like to elaborate? - Carsten Hi

Re: [Orgmode] org-babel-tangle tangles too much !

2009-12-01 Thread Thomas S. Dye
]] (a) (b) ;; b ends here Is this what you're after? HTH, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com ___ Emacs-orgmode mailing list Please use `Reply All' to send

Re: [Orgmode] Re: org-babel-tangle tangles too much !

2009-12-01 Thread Thomas S. Dye
Hi Nicolas, On Dec 1, 2009, at 7:55 AM, Nicolas Girard wrote: On Tue, 01 Dec 2009 05:43:38 -1000, Thomas S. Dye wrote : Your code snippet doesn't tangle at all here. Perhaps you have a setting somewhere that has an effect on tangling? I'm intending my file (username.org) to be processed

Re: [Orgmode] Re: [babel] R questions

2009-12-08 Thread Thomas S. Dye
Aloha Sebasien, On Dec 7, 2009, at 11:50 PM, Sébastien Vauban wrote: But what's a NA value in general? Is 0 always a meaningful value as numeric? Context-sensitive.. NA is a logical constant of length 1 which contains a missing value indicator. Whether or not 0 is a meaningful value as

Re: [Orgmode] [Babel] - importing a data file- missing header row

2009-12-08 Thread Thomas S. Dye
Hi Graham, On Dec 8, 2009, at 6:41 AM, Graham Smith wrote: I need a bit of help importing a data file into orgmode/babel. The import doesn't seem to know about having a header row #+srcname:woodland #+begin_src R read.table(/home/graham/Dropbox/College/BY4001/WoodlandData/

Re: [Orgmode] Re: [babel] R questions

2009-12-08 Thread Thomas S. Dye
Hi Sebastien, On Dec 8, 2009, at 11:37 AM, Sébastien Vauban wrote: Hi Thomas, Thomas S. Dye wrote: On Dec 7, 2009, at 11:50 PM, Sébastien Vauban wrote: [2] I guess one could potentially think about dealing with missing values more explicitly in org-babel. E.g. there could be a header

Re: [Orgmode] [babel] R - variable names in summary

2009-12-09 Thread Thomas S. Dye
Hi Graham, On Dec 9, 2009, at 10:33 AM, Graham Smith wrote: Dan, That's great, I am beginning to grasp how this works But I would never have figured out the :results output method, however. OK, it would be really helpful if you could let us know how we should improve the documentation

Re: [Orgmode] Beamer support in Org-mode

2009-12-10 Thread Thomas S. Dye
Hi Mark, On Dec 10, 2009, at 10:49 AM, Mark Elston wrote: I have been following this discussion with some interest as it may provide the basis for something I am interested in doing as well. I hope my discussion doesn't muddy the waters too much... Nick Dokos wrote: Darlan Cavalcante Moreira

[Orgmode] [babel] Idiomatic handling of quotes

2009-12-17 Thread Thomas S. Dye
) 'data.frame': 8 obs. of 1 variable: $ V1: chr \theta-1.csv\ \theta-2.csv\ \theta-3.csv\ \theta-4.csv\ ... Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com ___ Emacs

Re: [Orgmode] [babel] Idiomatic handling of quotes

2009-12-18 Thread Thomas S. Dye
Hi Francesco, On Dec 17, 2009, at 11:20 PM, Francesco Pizzolante wrote: Hi Thomas, In the example below, note that the R representation of the directory listing escapes the quotes in the original and encloses it all in a second set of quotes, e.g. \theta-1.csv\. This must come up a

[Orgmode] Folding, unexpected behavior

2009-12-18 Thread Thomas S. Dye
Aloha all, I'm experiencing some unexpected behavior as I struggle to upgrade to Emacs 23 and the emacs starter kit from Carbon Emacs. In my org files, TAB only folds a headline on columns 4 and higher. In columns 1-3 on a headline TAB sends an error to the mini-buffer that says

Re: [Orgmode] Folding, unexpected behavior

2009-12-19 Thread Thomas S. Dye
Fixed. Apologies for the noise. Tom On Dec 18, 2009, at 9:00 PM, Thomas S. Dye wrote: Aloha all, I'm experiencing some unexpected behavior as I struggle to upgrade to Emacs 23 and the emacs starter kit from Carbon Emacs. In my org files, TAB only folds a headline on columns 4 and higher

Re: [Orgmode] Beamer support in Org-mode

2009-12-19 Thread Thomas S. Dye
Hi Daniel, On Dec 18, 2009, at 11:01 AM, Daniel Martins wrote: \pnote could be an option Another idea is to reserve the lowest level to notes * section ** subsection *** frame etc ** notes (I don't know how many *'s are needed) maybe we can set a number / variable like

Re: [Orgmode] Beamer support in Org-mode

2009-12-21 Thread Thomas S. Dye
Aloha Carsten, I've had a chance to look at your first draft of beamer support. You've done a terrific job. So much of the draft is right that it helps to focus thoughts on the parts that are candidates for discussion and possible change. Along those lines, I don't think using

Re: [Orgmode] Beamer support in Org-mode

2009-12-21 Thread Thomas S. Dye
Hi Carsten, On Dec 21, 2009, at 12:28 PM, Carsten Dominik wrote: ... I've had a chance to look at your first draft of beamer support. You've done a terrific job. So much of the draft is right that it helps to focus thoughts on the parts that are candidates for discussion and possible

Re: [Orgmode] Selective Export Question

2009-12-24 Thread Thomas S. Dye
Merry Christmas Mark, One way to create two LaTeX documents in the same org file using common elements and keeping fine control over the LaTeX output is to use Org-babel. Here's an example from the Uses section of the Org-babel documentation on Worg: ** Example *** TODO Your name

Re: [Orgmode] radio tables in an org buffer

2009-12-26 Thread Thomas S. Dye
Hi Carsten, On Dec 26, 2009, at 12:43 AM, Carsten Dominik wrote: On Dec 25, 2009, at 6:36 PM, Thomas S. Dye wrote: Aloha all, Is it possible to use radio tables and lists inside an org buffer? I'm writing and tangling LaTeX with Org-babel and it would be useful to leverage the LaTeX

Re: [Orgmode] autoloading stuff

2009-12-27 Thread Thomas S. Dye
Hi Andrea, I'm not certain I understand your question, but it brings to mind the Getting Started section of http://orgmode.org/worg/org-contrib/babel/intro.php, which indicates that you can activate whatever subset of supported languages you wish. The typo you pointed out in an earlier

Re: [Orgmode] Re: autoloading stuff

2009-12-27 Thread Thomas S. Dye
Hi Andrea, On Dec 27, 2009, at 12:53 PM, andrea wrote: Thomas S. Dye t...@tsdye.com writes: Hi Andrea, I'm not certain I understand your question, but it brings to mind the Getting Started section of http://orgmode.org/worg/org-contrib/babel/intro.php, which indicates that you can activate

Re: [Orgmode] Re: Orgmode + other modes for outlining and studying.

2010-01-09 Thread Thomas S. Dye
Aloha all, On Jan 9, 2010, at 11:22 AM, Eric Schulte wrote: Sébastien Vauban wxhgmqzgw...@spammotel.com writes: [...] And, to work on that source block, just hit C-c C-c when point is in the block. Correction: hit C-c ' to edit a source block in it's major mode Currently, java isn't

[Orgmode] [babel] S-TAB folding

2010-01-12 Thread Thomas S. Dye
Aloha all, S-TAB on a #+begin_src line folds only the source code block and not the entire buffer, as it does elsewhere. Is this the desired behavior? All the best, Tom ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the

Re: [Orgmode] Automatically archive todo-items that are DONE?

2010-01-18 Thread Thomas S. Dye
On Jan 18, 2010, at 7:31 AM, Greg Wilson wrote: Hello, I am a new user, please bear with me. I keep lots of TODO-lists in a file: * project1 ** DONE ... ** TODO ... ... * project 2 ** DONE ... After a while, when the number of TODO-items that are turned into DONE-items is high, the list gets

Re: [Orgmode] [babel] Moving to babel the whole configuration

2010-01-21 Thread Thomas S. Dye
On Jan 21, 2010, at 6:19 AM, andrea wrote: I'm really tempted to move all my emacs configuration in only one big file. This would also help me to make it more consistent and readable. But I'm afraid to mess up something, in theory I just need: - a simple org and babel loader - one big file

Re: [Orgmode] org-babel: Managing a bibtex database

2010-01-21 Thread Thomas S. Dye
On Jan 21, 2010, at 6:20 AM, Taru Karttunen wrote: Hello I am wondering whether org-babel would be suitable for managing a bibtex database of ~1500 entries. I am thinking of making Bibtex entries into literate source code and thus have org-mode managing them in a more sensible way. Has

Re: [Orgmode] [babel] Moving to babel the whole configuration

2010-01-26 Thread Thomas S. Dye
On Jan 26, 2010, at 10:34 AM, Dan Davison wrote: Eric Schulte schulte.e...@gmail.com writes: Manish mailtomanish.sha...@gmail.com writes: On Thu, Jan 21, 2010 at 10:15 PM, Dan Davison wrote: andrea writes: I'm really tempted to move all my emacs configuration in only one big file. This

[Orgmode] Symbol's value as variable is void

2010-01-27 Thread Thomas S. Dye
)) ) Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org

Re: [Orgmode] Symbol's value as variable is void

2010-01-27 Thread Thomas S. Dye
On Jan 27, 2010, at 1:42 PM, Nick Dokos wrote: Thomas S. Dye t...@tsdye.com wrote: Aloha all, I haven't published to HTML in a while. In the interim, I've re- located several .org files and updated both Org-mode and Org-babel. When I try to publish a project, I end up with an error

Re: [Orgmode] Symbol's value as variable is void

2010-01-27 Thread Thomas S. Dye
set inside of a let in org-exp-blocks is used to constrain searches in org-babel-exp to ensure that a babel block doesn't overwrite non-babel src blocks Nick Thomas S. Dye t...@tsdye.com wrote: On Jan 27, 2010, at 1:42 PM, Nick Dokos wrote: Thomas S. Dye t...@tsdye.com wrote: Aloha

Re: [Orgmode] [babe] noweb used to work but no longer does... what has changed?

2010-02-01 Thread Thomas S. Dye
On Feb 1, 2010, at 1:06 PM, Eric S Fraga wrote: Hi, after two months away from a particular document, I find that all my babel codes in that document no longer work as they used to. Specifically, references to other source code blocks are now no longer expanded: --8---cut

[Orgmode] Re: Using R in Org mode with several sourced files

2010-02-02 Thread Thomas S. Dye
, Feb 1, 2010 at 9:59 PM Subject: Re: Fwd: [ESS] generating TODO list? To: Rainer M Krug r.m.k...@gmail.com Cc: Thomas S. Dye t...@tsdye.com [...] Sure, when you change the code in the org file, you have to re- run org-babel-tangle before you run your new R code. Ant

Re: [Orgmode] org-babel: Why isn't =:results value= working with (my) python?

2010-02-04 Thread Thomas S. Dye
setup, or perhaps org-babel-python? I have tested this on both my Windows and Ubuntu setups. I am using org version 6.34trans. Cheers, Scott Hi Scott, You need :session. #+begin_src python :session :results value 2 + 2 #+end_src #+results: : 4 hth, Tom Thomas S. Dye, Ph.D. T. S. Dye

[Orgmode] [babel] (wrong-type-argument number-or-marker-p nil)

2010-02-07 Thread Thomas S. Dye
Aloha all, I pulled the latest org-mode this morning and got an error starting emacs afterwards that appears to be tied to org-babel-load-file. I ran git bisect and ended up here: 131441dbd2d16e92f863864ed536f37fcd4a85fc is first bad commit commit 131441dbd2d16e92f863864ed536f37fcd4a85fc

Re: [Orgmode] [babel] (wrong-type-argument number-or-marker-p nil)

2010-02-07 Thread Thomas S. Dye
if the org-mode file is newer than the elisp file Thomas S. Dye t...@tsdye.com writes: Aloha all, I pulled the latest org-mode this morning and got an error starting emacs afterwards that appears to be tied to org-babel-load-file. I ran git bisect and ended up here

Re: [Orgmode] [babel] (wrong-type-argument number-or-marker-p nil)

2010-02-08 Thread Thomas S. Dye
-attributes file))) (let* ((base-name (file-name-sans-extension file)) (exported-file (concat base-name .el))) ;; tangle if the org-mode file is newer than the elisp file Thomas S. Dye t...@tsdye.com writes: Aloha all, I pulled the latest org-mode this morning and got

Re: [Orgmode] Org-style outline

2010-02-12 Thread Thomas S. Dye
On Feb 11, 2010, at 7:38 PM, Chao Lu wrote: Dear all, I'm writing to see if there's anyway to use org-like outline in ALL kinds of files, like my emacs configuration file, whose suffix is .el. Could I tell Emacs ;;; headline 1 ;; headline 2 And it begin to have the ability to display

[Orgmode] org-publish-validate-link

2010-02-17 Thread Thomas S. Dye
the org-mode publishing process and would validate links in the production environment that were correctly established in the publication location. I'm using Org-mode version 6.34trans (release_6.34c.89.g0c39) on emacs 23. All the best, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues

Re: [Orgmode] org-publish-validate-link

2010-02-21 Thread Thomas S. Dye
will also not be fixed. You can force republishing by calling your publish command with a C- u prefix. Have you tried that? - Carsten On Feb 17, 2010, at 9:50 PM, Thomas S. Dye wrote: Aloha all, org-publish-validate-link rejects a valid link to a file when the file is created during

Re: [Orgmode] org-publish-validate-link

2010-02-23 Thread Thomas S. Dye
On Feb 22, 2010, at 8:38 PM, Carsten Dominik wrote: On Feb 21, 2010, at 2:53 PM, Thomas S. Dye wrote: Hi Carsten, Thanks for this. I add a new file that is the target for the link. It is copied to its correct publication place. The exported html file contains a new description

Re: [Orgmode] Let's TALK about it

2010-02-25 Thread Thomas S. Dye
On Feb 25, 2010, at 5:29 AM, Eric Schulte wrote: Hi Andrea, Andrea Crotti andrea.crott...@gmail.com writes: [...] What could be the minimal introduction needed before talking about org-babel for a smart (but maybe not emacser) audience? That's an excellent question, and I have no idea

[Orgmode] Export latex source blocks as HTML

2010-02-26 Thread Thomas S. Dye
that used to export perfectly have all lost their latex source code blocks in HTML output. All the best, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com ___ Emacs

Re: [Orgmode] Export latex source blocks as HTML

2010-02-28 Thread Thomas S. Dye
On Feb 27, 2010, at 6:47 PM, Nick Dokos wrote: Thomas S. Dye t...@tsdye.com wrote: Aloha all, Exporting this file to html gives me a source code block for bibtex but not for latex. * Test export #+BEGIN_SRC latex No export with latex #+END_SRC #+BEGIN_SRC bibtex Export OK with bibtex

Re: [Orgmode] Export latex source blocks as HTML

2010-03-01 Thread Thomas S. Dye
On Feb 28, 2010, at 9:54 PM, Carsten Dominik wrote: On Feb 28, 2010, at 5:57 PM, Thomas S. Dye wrote: On Feb 27, 2010, at 6:47 PM, Nick Dokos wrote: Thomas S. Dye t...@tsdye.com wrote: Aloha all, Exporting this file to html gives me a source code block for bibtex but not for latex

Re: [Orgmode] Re: Writing a dissertation using org-mode

2010-03-04 Thread Thomas S. Dye
On Mar 4, 2010, at 4:02 AM, Maurizio Vitale wrote: I'd recommend you use auctex for writing your thesis: it knows about many LaTeX packages (and you can teach it more), so you get autocompletion and highlighting. It does quasi-wysiwyg for fonts and math. It can render fragments for quick

Re: [Orgmode] New Org-mode talk by Carsten Dominik

2010-03-05 Thread Thomas S. Dye
On Mar 5, 2010, at 10:07 AM, Stefan Vollmar wrote: Hallo, we proudly present: Emacs Org-mode: Organizing a Scientist's Life and Work a talk by Carsten Dominik presented on February 8th 2010 at our institute. The recording of the talk is available here:

Re: [Orgmode] Re: Writing a dissertation using org-mode

2010-03-06 Thread Thomas S. Dye
! All the best, Tom Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http://www.tsdye.com ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org

Re: [Orgmode] [babel] cannot code to execute since changing to emacs starter kit

2010-03-07 Thread Thomas S . Dye
On Mar 7, 2010, at 6:52 AM, Graham Smith wrote: I guess I am being stupid here, but I have changed my set up to using Eric's (Schulte) start up kit for emacs and now when I try to use C-c C-c to execute a code block I get an error C-c C-c can do nothing useful at this location As far as I can

Re: [Orgmode] docs bug for babel's R colnames support

2010-03-11 Thread Thomas S. Dye
___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode Thomas S. Dye, Ph.D. T. S. Dye Colleagues, Archaeologists, Inc. Phone: (808) 529-0866 Fax: (808) 529-0884 http

Re: [Orgmode] Re: [babel] org-babel: tangling to latex .sty/.cls files

2010-03-17 Thread Thomas S. Dye
On Mar 17, 2010, at 5:32 AM, Chris Gray wrote: Dan Davison wrote: Unless I hear views to the contrary from other org-babel users, I'm going to change this later today so that, when a file name is supplied for tangling, org-babel no longer attempts to guess the file extension. The only

Re: [O] Using org-mode for Research and Notetaking

2011-07-18 Thread Thomas S. Dye
to specify a function to determine on screen display. But, I might be missing something. All the best, Tom -- Thomas S. Dye http://www.tsdye.com

[O] LaTeX export of lists

2011-07-24 Thread Thomas S. Dye
the blank line snuck back in. I'm using Org-mode version 7.6 (release_7.6.102.g05c6). All the best, Tom -- Thomas S. Dye http://www.tsdye.com

Re: [O] LaTeX export of lists

2011-07-25 Thread Thomas S. Dye
Nicolas Goaziou n.goaz...@gmail.com writes: Hello, t...@tsdye.com (Thomas S. Dye) writes: Nicolas Goaziou n.goaz...@gmail.com writes: That raises an interesting question: can a list belong to a paragraph in Org? According to paragraph-related regexps, it can't, for now. And your request

Re: [O] Using org-mode for Research and Notetaking

2011-07-26 Thread Thomas S. Dye
Bastien b...@altern.org writes: Hi Tom, t...@tsdye.com (Thomas S. Dye) writes: Aloha all, Perhaps they are [[tag:boxed][already]] here with org-add-link-type? It seems to me that all that's missing is a way to specify a function to determine on screen display. But, I might be missing

[O] ebib configuration for org-bibtex

2011-08-02 Thread Thomas S. Dye
now just takes me back to the Org-mode file, rather than launching a pdf reader on my local copy of the article. Any ideas how I can achieve my goal? All the best, Tom -- Thomas S. Dye http://www.tsdye.com

Re: [O] ebib configuration for org-bibtex

2011-08-05 Thread Thomas S. Dye
Eric Schulte schulte.e...@gmail.com writes: t...@tsdye.com (Thomas S. Dye) writes: Aloha all, I'm trying, partially successfully, to configure org-bibtex so it mimics some useful features of ebib. In particular, I'm wanting to add several optional fields that ebib uses. I have

Re: [O] problem with code blocks

2011-08-07 Thread Thomas S. Dye
to find footnotes in code blocks?Any help appreciated!!!Cheers Rolf -- Thomas S. Dye http://www.tsdye.com

Re: [O] ebib configuration for org-bibtex

2011-08-07 Thread Thomas S. Dye
Eric Schulte schulte.e...@gmail.com writes: t...@tsdye.com (Thomas S. Dye) writes: Aloha all, I'm trying, partially successfully, to configure org-bibtex so it mimics some useful features of ebib. In particular, I'm wanting to add several optional fields that ebib uses. I have

Re: [O] Publishing problem on Worg due to babel intro

2011-08-11 Thread Thomas S. Dye
python return x*x #+end_src then the error goes away, but it is raised later in the export, presumably on another code block. hth, Tom -- Thomas S. Dye http://www.tsdye.com

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