Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory sc8-pr-cvs5.sourceforge.net:/tmp/cvs-serv557
Added Files:
coot.info
Log Message:
coot move into stable
--- NEW FILE: coot.info ---
Package:coot
Version: 0.1.2
Revision: 1006
GCC: 4.0
Source: http://www.ysbl.york.ac.uk/~emsley/software/%n-%v.tar.gz
Source-MD5: 10289f909d6824ef4923a97cfb0e63a4
SourceDirectory: %n-%v
Source2:
http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz
Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6
Source3:
http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz
Source3-MD5: c09bb6b5524901cb0fde14589546224e
###############################################################################
BuildDepends: ccp4-onlylibs-dev (>= 6.0-1011), glib, gtk+2, freeglut,
gtkglarea, guile16, guile16-dev, gsl, libglade2, gtk-canvas (>= 0.1.1-20),
libart2 (>= 2.3.16-2), libart2-shlibs (>= 2.3.16-2), guile16-net-http,
gtk+2-dev, libgettext3-dev, imlib, libjpeg, giflib, libpng3, gnome-libs-dev,
libiconv-dev
#
Depends: guile16-shlibs, gsl-shlibs, libglade2-shlibs, guile16-gtk,
guile16-www, guile16-gui, guile16-goosh (>= 1.3-2), guile16, guile16-net-http,
freeglut-shlibs, libart2-shlibs (>= 2.3.16-2), coot-shlibs (= %v-%r),
imlib-shlibs, libjpeg-shlibs, giflib-shlibs, libpng3-shlibs, glib-shlibs,
gtk+2-shlibs, gnome-libs-shlibs
#
BuildDependsOnly: false
NoSetLDFLAGS: true
###############################################################################
Description: Crystallographic molecular graphics
DescDetail: <<
Coot stands for Crystallograhic Object Oriented Toolkit. It is a testbest
toolkit for (Protein) Crystallography. Coot uses professional (and free)
widgets (with the gui builder glade), mmdb, clipper, and OpenGL, together
with a new approach to map contouring and importing/creation and other
(modelling) operations. The mmdb, clipper, ssm and mccp4 libraries are now
provided in the ccp4-onlylibs-dev fink package. On-line documentation is
available from the coot Web site (see below) and is updated regularly.
<<
###############################################################################
PatchScript: <<
#!/bin/zsh -ef
perl -pi.bak -e 's|use-modules \(goosh\)|use-modules \(goosh goosh\)|g'
scheme/coot-utils.scm
perl -pi.bak -e 's/include <malloc.h>//g' **/*.c
#perl -pi -e 's|no_tips = _coot.no_tips|#no_tips = _coot.no_tips|g' src/coot.py
#perl -pi -e 's|_coot.set_ncs_homology_leve|_coot.set_ncs_homology_level|g'
src/coot.py
<<
###############################################################################
ConfigureParams: --with-mmdb-prefix=$CCP4 --with-clipper-prefix=$CCP4
--with-fftw=$CCP4 --with-glut-prefix=%p --with-gl-prefix=/usr/X11R6
--with-gtkcanvas-prefix=%p --with-ssmlib-prefix=$CCP4 --with-imlib-prefix=%p
--with-gtkgl-prefix=%p --with-glib-prefix=%p --with-gsl-prefix=%p --with-guile
--with-python
###############################################################################
CompileScript: <<
#!/bin/zsh -ef
alias
python="/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3"
source %p/share/xtal/ccp4-onlylibs-dev-6.0/include/ccp4.setup-zsh
export
PATH=/System/Library/Frameworks/Python.framework/Versions/Current/bin:%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH
export SED=/usr/bin/sed
export
PYTHONPATH="/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3"
FLIBS="-L/System/Library/Frameworks/Python.framework/Versions/Current/lib
-L%p/lib" \
CPPFLAGS="-I$CCP4/lib/clipper/clipper/mmdbold
-I/System/Library/Frameworks/Python.framework/Versions/Current/include/python2.3"
\
LDFLAGS="-L$CLIB -L/usr/lib -lSystemStubs -flat_namespace
-L/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3/config"
\
CXX="g++" \
CC="gcc" \
py_path=/System/Library/Frameworks/Python.framework/Versions/Current/bin/python2.3
\
./configure %c
rm src/coot_wrap_python.cc
#
make
<<
###############################################################################
InstallScript: <<
#!/bin/zsh -ef
source %p/share/xtal/ccp4-onlylibs-dev-6.0/include/ccp4.setup-zsh
export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH
export PYTHONPATH=""
export SED=/usr/bin/sed
cp src/coot.py python/coot.py
make install prefix=%i
#
# Clean up the 120 MB mess, which zsh makes so much fun:
/bin/rm -f **/*.o
# enable coot to use its own refmac library:
#
perl -pi.bak -e 's|\# COOT_REFMAC_LIB|COOT_REFMAC_LIB|g' setup/coot.sh
perl -pi.bak -e 's|\# export COOT_REFMAC_LIB_DIR|export COOT_REFMAC_LIB_DIR|g'
setup/coot.sh
perl -pi.bak -e 's|\# PYTHONPATH|PYTHONPATH|g' setup/coot.sh
perl -pi.bak -e 's|\# PYTHONPATH|PYTHONPATH|g' setup/coot.csh
perl -pi.bak -e 's|\# setenv COOT_REFMAC_LIB_DIR|setenv COOT_REFMAC_LIB_DIR|g'
setup/coot.csh
#
# Add ancillary files to %i/share/coot:
#
mkdir -p %i/share/coot/etc
mkdir -p %i/share/coot/python
cp src/coot.py %i/share/coot/python/coot.py
cp -R setup %i/share/coot/.
cp -R ../lib %i/share/coot/.
# cp %i/share/coot/etc/python/coot.py %i/share/coot/python/.
# Reference structures should be in %i/share/coot/reference-structures
cp -R ../reference-structures %i/share/coot/.
cp -R * %i/share/coot/etc/.
# 0.1.0 %n (>= 0.1.0-pre-1-1) 0.1.0 %n (>= 0.1.0-pre-1-1)
# Get rid of spurious, wrongly placed directory
rm -rf %i/setup
# The new wrapper creates problems. Get rid of it.
/bin/rm -f %i/bin/coot
cp %i/bin/coot-real %i/bin/coot
/bin/rm -f %i/bin/coot-real
<<
###############################################################################
DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO
License: GPL
Maintainer: W. G. Scott <[EMAIL PROTECTED]>
Homepage: http://www.ysbl.york.ac.uk/~emsley/coot/doc/user-manual.html
###############################################################################
#
SplitOff: <<
Package: %N-shlibs
Files: <<
lib/libccp4mg-*.dylib
lib/libcoot-*.dylib
<<
Shlibs: <<
%p/lib/libccp4mg-surface.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libccp4mg-utils.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-analysis.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-AngleInfo.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-atomutils.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-cabuild.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-compat.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-coord-extras.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-coord-utils.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-coords.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-db-main.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-geometry.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-high-res.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-ideal.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-isosurface.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-ligand.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-map-heavy.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-map-utils.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-mini-mol.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-mmtz-extras.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-sequence-view.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-shelx.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-skeleton.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-surface.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-tw.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-utils.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-wrap-guile.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
%p/lib/libcoot-wrap-python.0.0.0.dylib 0.1.2 %n (>= 0.1.2-1001)
<<
<<
#
###############################################################################
#
SplitOff2: <<
Package: %N-dev
BuildDependsOnly: True
Files: <<
include/*
lib/*.a
lib/*.la
<<
<<
###############################################################################
-------------------------------------------------------------------------
Take Surveys. Earn Cash. Influence the Future of IT
Join SourceForge.net's Techsay panel and you'll get the chance to share your
opinions on IT & business topics through brief surveys - and earn cash
http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV
_______________________________________________
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits
