Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv15901
Modified Files:
pymol-py.patch
Log Message:
add pynmr plugin
Index: pymol-py.patch
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pymol-py.patch,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- pymol-py.patch 31 Mar 2009 23:55:47 -0000 1.10
+++ pymol-py.patch 4 Apr 2009 15:37:32 -0000 1.11
@@ -125,3 +125,50 @@
def open_eMovie():
+--- pymol/../pynmr/pmg_tk/startup/pynmr/run.macos.org 2006-04-06
10:10:45.000000000 -0400
++++ pymol/../pynmr/pmg_tk/startup/pynmr/run.macos 2009-04-03
21:04:39.000000000 -0400
+@@ -1,4 +1,4 @@
+-/Users/leigh/pynmr/swig/swig -python -I/Users/leigh/pynmr/swig/Lib/
-I/Users/leigh/pynmr/swig/Lib/python Crmsd.i
++../../../swig/swig -python -I../../../swig/Lib -I../../../swig/Lib//python
Crmsd.i
+
+ # now fix the error that swig produces...
+ sed -e '/SWIG_init/s/init_/init/' -e '/SWIG_name/s/_Crmsd/Crmsd/ '
Crmsd_wrap.c > Crmsd_wrap2.c
+@@ -8,8 +8,8 @@
+ #gcc -c Crmsd.c Crmsd_wrap.c -I../../../meschach -I/usr/include/python2.3 -lm
+ #gcc -shared Crmsd.o Crmsd_wrap.o meschach.a -o Crmsd.so
+
+-gcc -fno-common -c Crmsd.c Crmsd_wrap.c -I/Users/leigh/pynmr/meschach
-I/usr/include/python2.3 -D_POSIX_C_SOURCE
+-gcc -bundle -flat_namespace -L/usr/include/python2.3 Crmsd.o Crmsd_wrap.o
/Users/leigh/pynmr/meschach/meschach.a -lPython -o Crmsd.so
++gcc -O3 -m32 -fno-common -c Crmsd.c Crmsd_wrap.c -I../../../meschach
-...@finkprefix@/include/python2.X -D_POSIX_C_SOURCE
++gcc -O3 -m32 -bundle -flat_namespace Crmsd.o Crmsd_wrap.o
../../../meschach/meschach.a -...@finkprefix@/lib/python2.X/config -lpython2.X
-o Crmsd.so
+
+
+
+--- pymol/../pynmr/meschach/makefile.org 2006-04-06 09:09:09.000000000
-0400
++++ pymol/../pynmr/meschach/makefile 2009-04-01 00:26:44.000000000 -0400
+@@ -8,14 +8,14 @@
+
+ srcdir = .
+
+-CC = gcc
++CC = gcc -m32
+
+ DEFS = -DHAVE_CONFIG_H
+ LIBS = -lm
+ RANLIB = ranlib
+
+
+-CFLAGS = -O -fPIC
++CFLAGS = -O3 -fPIC
+
+
+ .c.o:
+--- pymol/../pynmr/pmg_tk/startup/pynmr/test_data/test.script.org
2009-04-04 00:49:35.000000000 -0400
++++ pymol/../pynmr/pmg_tk/startup/pynmr/test_data/test.script 2009-04-04
00:52:04.000000000 -0400
+@@ -6,5 +6,5 @@
+ pairfit=0)
+ nmr_cmd.C_do_best_range('test_1', 'C N CA', \
+ "test_1 test_2 test_3", "all", \
+- "/home2/leigh/Proj/pynmr/pmg_tk/startup/pynmr/test_data/", 1.0)
++ "@FINKPREFIX@/lib/pymol-py2X/modules/pmg_tk/startup/pynmr/test_data",
1.0)
+
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