Update of /cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv23088
Modified Files:
coot.info
Log Message:
coot version upgrade
Index: coot.info
===================================================================
RCS file:
/cvsroot/fink/dists/10.4-transitional/unstable/main/finkinfo/sci/coot.info,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -d -r1.12 -r1.13
--- coot.info 17 Jan 2006 23:32:36 -0000 1.12
+++ coot.info 19 Feb 2006 05:13:02 -0000 1.13
@@ -1,19 +1,19 @@
Package:coot
-Version: 0.1.0-pre-1
-Revision: 1
+Version: 0.1.0-pre-3
+Revision: 4
GCC: 3.3
#Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz
Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz
-Source-MD5: 94fe4c4af6ae1acfa59f36393fa34aa9
+Source-MD5: 6cb82b1069c1975ae05c7215e848af27
SourceDirectory: %n-%v
Source2:
http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz
-Source2-MD5: c7aa4ee8861d7e82df985fe2eb39c289
+Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6
Source3:
http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz
-Source3-MD5: c09bb6b5524901cb0fde14589546224e
+Source3-MD5: c09bb6b5524901cb0fde14589546224e
###############################################################################
-BuildDepends: ccp4-onlylibs-dev, glib, gtk+2, freeglut, gtkglarea, guile16,
guile16-dev, gsl, libglade2, gtk-canvas (>= 0.1.1-20), libart2 (>= 2.3.16-2),
libart2-shlibs (>= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev,
imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev
+BuildDepends: ccp4-onlylibs-dev, glib, gtk+2, freeglut, gtkglarea, guile16,
guile16-dev, gsl, libglade2, gtk-canvas (>= 0.1.1-20), libart2 (>= 2.3.16-2),
libart2-shlibs (>= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev,
imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24
#
-Depends: guile16-shlibs, gtk-canvas (>= 0.1.1-20), gsl-shlibs,
libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (>=
1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (>=
2.3.16-2), coot-shlibs (= %v-%r)
+Depends: guile16-shlibs, gtk-canvas (>= 0.1.1-20), gsl-shlibs,
libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (>=
1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (>=
2.3.16-2), coot-shlibs (= %v-%r), python24
#
BuildDependsOnly: false
NoSetLDFLAGS: true
@@ -25,7 +25,8 @@
widgets (with the gui builder glade), mmdb, clipper, and OpenGL, together
with a new approach to map contouring and importing/creation and other
(modelling) operations. The mmdb, clipper, ssm and mccp4 libraries are now
-provided in the ccp4-onlylibs-dev fink package.
+provided in the ccp4-onlylibs-dev fink package. On-line documentation is
+available from the coot Web site (see below) and is updated regularly.
<<
###############################################################################
PatchScript: <<
@@ -34,18 +35,21 @@
perl -pi.bak -e 's/include <malloc.h>//g' **/*.c
<<
###############################################################################
-ConfigureParams: --with-mmdb-prefix=$CCP4 --with-clipper-prefix=$CCP4
--with-fftw=$CCP4 --with-glut-prefix=%p --with-gl-prefix=/usr/X11R6
--with-gtkcanvas-prefix=%p --with-ssmlib-prefix=$CCP4 --with-imlib-prefix=%p
--with-gtkgl-prefix=%p --with-glib-prefix=%p --with-gsl-prefix=%p --with-guile
+ConfigureParams: --with-mmdb-prefix=$CCP4 --with-clipper-prefix=$CCP4
--with-fftw=$CCP4 --with-glut-prefix=%p --with-gl-prefix=/usr/X11R6
--with-gtkcanvas-prefix=%p --with-ssmlib-prefix=$CCP4 --with-imlib-prefix=%p
--with-gtkgl-prefix=%p --with-glib-prefix=%p --with-gsl-prefix=%p --with-guile
--with-python
###############################################################################
CompileScript: <<
#!/bin/zsh -ef
source %p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup-zsh
-export PATH=%p/share/guile/1.6/scripts/binoverride:$PATH
+export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH
+export SED=/usr/bin/sed
+export PYTHONPATH=""
FLIBS="-L%p/lib" \
CPPFLAGS="-I$CCP4/lib/clipper/clipper/mmdbold" \
LDFLAGS="-L$CLIB -L/usr/lib -lSystemStubs -flat_namespace -L%p/lib" \
FC="%p/bin/g77" \
CXX="/usr/bin/g++-3.3" \
CC="/usr/bin/gcc" \
+py_path=%p/bin/python \
./configure %c
#
make
@@ -54,31 +58,45 @@
InstallScript: <<
#!/bin/zsh -ef
source %p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup-zsh
+export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH
+export PYTHONPATH=""
+export SED=/usr/bin/sed
+cp src/coot.py python/coot.py
make install prefix=%i
#
+# Clean up the 120 MB mess, which zsh makes so much fun:
+/bin/rm -f **/*.o
# enable coot to use its own refmac library:
#
perl -pi.bak -e 's|\# COOT_REFMAC_LIB|COOT_REFMAC_LIB|g' setup/coot.sh
perl -pi.bak -e 's|\# export COOT_REFMAC_LIB_DIR|export COOT_REFMAC_LIB_DIR|g'
setup/coot.sh
+perl -pi.bak -e 's|\# PYTHONPATH|PYTHONPATH|g' setup/coot.sh
+perl -pi.bak -e 's|\# PYTHONPATH|PYTHONPATH|g' setup/coot.csh
perl -pi.bak -e 's|\# setenv COOT_REFMAC_LIB_DIR|setenv COOT_REFMAC_LIB_DIR|g'
setup/coot.csh
#
# Add ancillary files to %i/share/coot:
#
mkdir -p %i/share/coot/etc
+mkdir -p %i/share/coot/python
cp -R setup %i/share/coot/.
cp -R ../lib %i/share/coot/.
+# cp %i/share/coot/src/coot.py %i/share/coot/python/.
# Reference structures should be in %i/share/coot/reference-structures
cp -R ../reference-structures %i/share/coot/.
cp -R * %i/share/coot/etc/.
# 0.1.0 %n (>= 0.1.0-pre-1-1) 0.1.0 %n (>= 0.1.0-pre-1-1)
# Get rid of spurious, wrongly placed directory
rm -rf %i/setup
+# The new wrapper creates problems. Get rid of it.
+/bin/rm -f %i/bin/coot
+cp %i/bin/coot-real %i/bin/coot
+/bin/rm -f %i/bin/coot-real
<<
###############################################################################
DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO
License: GPL
Maintainer: W. G. Scott <[EMAIL PROTECTED]>
-Homepage: http://www.ysbl.york.ac.uk/~emsley/coot/
+Homepage: http://www.ysbl.york.ac.uk/~emsley/coot/doc/user-manual.html
###############################################################################
#
SplitOff: <<
-------------------------------------------------------
This SF.net email is sponsored by: Splunk Inc. Do you grep through log files
for problems? Stop! Download the new AJAX search engine that makes
searching your log files as easy as surfing the web. DOWNLOAD SPLUNK!
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=103432&bid=230486&dat=121642
_______________________________________________
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits
