[Fink-devel] perl5162-core build/install problem on case-sensitive FS

It seems I am running into troubles with my fink installation on a case-sensitive volume again, but I don't quite understand the issue. perl5162-core builds ok so far, but the package fails to install with Validating package file /sw/fink/dists/stable/main/finkinfo/languages/perl5162.info...

Re: [Fink-devel] perl5162-core build/install problem on case-sensitiveFS

Hi Dan, thanks for the pointer, this seems to be a bigger can of worms than I've thought! It would seem, since the .deb contains both the lower- and uppercase version dirs with their content, it should install just fine on a case-sensitive filesystem, but apparently dpkg-deb is still

Re: [Fink-devel] perl5162-core build/install problem on case-sensitiveFS

On 19.11.2013, at 7:47PM, Hanspeter Niederstrasser f...@snaggledworks.com wrote: The 'missing' perl5.16 should be fixed in fink-0.36.1, released two days ago. Fink was incorrectly assuming that all perls were perlX.Y, but this is only the case for system-perl, while fink's perls have

Re: [Fink-devel] perl5162-core build/install problem on case-sensitiveFS

On 19.11.2013, at 8:36PM, Hanspeter Niederstrasser f...@snaggledworks.com wrote: On 11/19/2013 1:55 PM, Derek Homeier wrote: On 19.11.2013, at 7:47PM, Hanspeter Niederstrasser f...@snaggledworks.com wrote: The 'missing' perl5.16 should be fixed in fink-0.36.1, released two days ago

Re: [Fink-devel] perl5162-core build/install problem on case-sensitiveFS

On 20.11.2013, at 2:29AM, Hanspeter Niederstrasser f...@snaggledworks.com wrote: On 11/19/2013 8:04 PM, Derek Homeier wrote: But a lot of modules fail to build with this missing dependency on cc_runtime.h. There is no cc_runtime.h of either capitalisation in /sw/lib/perl5-core/5.16.2

[Fink-devel] astropy-0.3

throwing in a Python3 flavour of h5py, all built and tested (fink -m) with python2.6-3.3 under 10.5 and 10.8 (except for a couple of errors with python3.1). Cheers, Derek -- Derek Homeier

Re: [Fink-devel] Killing python26

On 20.03.2014, at 4:20PM, Daniel Johnson daniel.johnso...@gmail.com wrote: I agree. There's no reason to keep 2.6 around as 2.7 is fully backward compatible. Just an aside, anyone aware of any major Linux distros that still only provide 2.6? This was an issue for many packages like numpy to

Re: [Fink-devel] Killing python26

On 23.03.2014, at 9:50PM, Daniel Johnson daniel.johnso...@gmail.com wrote: Does anyone know btw if 3.4 already comes with full setuptools support included? It has a %i/bin/easy_install-3.4, and I was able to build and test coverage, nose and numpy without installing it, so maybe a change

[Fink-devel] PyQt-mac/x11 source/md5sum error

Hi, there seems to be some mixup of the source files and checksums for pyqt4: The checksum of the file PyQt-mac-gpl-4.10.4.tar.gz of package pyqt4-py27-4.10.4-1 is incorrect. The most likely cause for this is a corrupted or incomplete download Expected: 20940f6b2c957269cdd02d0efe537515 Actual:

[Fink-devel] dateutil-py tests require sip-py to run

Hi, found there is a missing TestDepends: six-py%type_pkg[python] in dateutil-py-2.2-1. Cheers, Derek -- ___ Fink-devel mailing

[Fink-devel] version conflicts with sip-pyNN-bin

fink update sip-py33-bin Information about 9023 packages read in 1 seconds. The following package will be installed or updated: sip-py33-bin Reading buildlock packages... All buildlocks accounted for.

Re: [Fink-devel] PyQt-mac/x11 source/md5sum error

On 05.04.2014, at 11:44PM, Daniel Johnson daniel.johnso...@gmail.com wrote: Well, not quite. The patch doesn't apply. Sigh. I'll have to work on it some more. I don't use the -x11 package so it doesn't get a lot of attention and I don't want to spend hours building qt4-x11. It builds with

Re: [Fink-devel] dateutil-py tests require sip-py to run

On 06.04.2014, at 5:58PM, Daniel Macks dma...@netspace.org wrote: found there is a missing TestDepends: six-py%type_pkg[python] in dateutil-py-2.2-1. Fixed (sip-pyXXX not six-pyXXX). hmm, I had gotten this error: sudo -u fink-bld [ENV] sh -c /tmp/fink.67Gmy /tmp/fink.3vLAc

Re: [Fink-devel] dateutil-py tests require *six*-py to run

On 06.04.2014, at 9:33PM, Derek Homeier de...@astro.physik.uni-goettingen.de wrote: On 06.04.2014, at 5:58PM, Daniel Macks dma...@netspace.org wrote: found there is a missing TestDepends: six-py%type_pkg[python] in dateutil-py-2.2-1. Fixed (sip-pyXXX not six-pyXXX). hmm, I

[Fink-devel] h5py broken after hdf5.8 update

Hi, h5py-py no longer builds with hdf5.8_1.8.13 due to an obsolete macro (meaning that the current version no longer works either unless enforcing HDF5_DISABLE_VERSION_CHECK). I've submitted a version patched with the appropriate changeset from github master (#4416). Cheers,

Re: [Fink-devel] h5py broken after hdf5.8 update

On 21.06.2014, at 5:44PM, Kurt Schwehr kurtschw...@yahoo.com wrote: :(. I saw the same issue recently, but have not yet had time to investigate -Kurt (maintainer of the h5py fink package) Apparently the H5FD_MPIPOSIX macro was not used anyway, so all it took was commenting it out; so

Re: [Fink-devel] [fink:package-submissions] #4416 h5py patch for hdf5 1.8.13

On 22.06.2014, at 1:54AM, Kurt Schwehr goat...@users.sf.net wrote: Thanks for finding the issue. Patch files drive me crazy, so I added the two changes as a patch script with two perl one liners. Thanks for the quick fix. Strangely, it did not work on the quite fresh fink installation of my

Re: [Fink-devel] trouble installing emacs24

On 23 Jun 2014, at 01:43 pm, Jesse Alama jesse.al...@gmail.com wrote: Emacs depends on the pkg 'passwd-games' so that user should normally be set up on the system. Try 'fink reinstall passwd-games' and select yes when asked to install the user. Thanks, that does seem to have made a

[Fink-devel] Fwd: locale problems [Astropy v0.4]

Hi, forwarding this here in case there are other Fink packages where this has become an issue (the package in question is on https://sourceforge.net/p/fink/package-submissions/4396/): Begin forwarded message: I had a look at the new release and actually ran into a problem right away

[Fink-devel] aquaterm-dev-1.1.1-3 case sensitivity issues

Hi, FYI building aquaterm with package validation fails for me on a *case sensitive* file system: Validating .deb dir /scratch.noindex/fink.build/root-aquaterm-dev-1.1.1-3... Error: Pathname collision on case-insensitive filesystems Offending file: /sw/share/aquaterm/adapters/c/ReadMe

Re: [Fink-devel] aquaterm-dev-1.1.1-3 case sensitivity issues

Hi Kevin, Fink Developers - I’m not sure of the best way to fix the problem. I searched man tar, but don’t see any options to deal with this. I could create a new tarball with file names that don’t collide, load that on the web somewhere, and change the source in the info to point to

Re: [Fink-devel] aquaterm-dev-1.1.1-3 case sensitivity issues

Hi Kevin, I committed an aquaterm update which I think corrects the problem. But, the original package validated for me, so I cannot be sure my fix will pass the validator. yes, no way really to find if it breaks on a case-insensitive fs without building on a case-sensitive one… But

[Fink-devel] phase .deb validation: libwpg-0.2-shlibs-0.2.2-2 failed (linked using flat namespace) on Yosemite

Hi, the validation step fails when built with update -m: Validating .deb dir /scratch.noindex/fink.build/root-libwpg-0.2-shlibs-0.2.2-2... Error: /scratch.noindex/fink.build/root-libwpg-0.2-shlibs-0.2.2-2/sw/lib/libwpg-0.2.2.dylib appears to have been linked using a flat namespace. If

Re: [Fink-devel] pytables-py-3.1.1-2

-- Derek Homeier Centre de Recherche Astrophysique de Lyon ENS Lyon 46, Allée d'Italie 69364 Lyon Cedex 07, France +33 47272-8894

[Fink-devel] nose-py problems

Hi Kurt, I found some issues with the build_tests run added to make the test suite for nose 1.3.4 work: setup.py build_tests makes the test run with python3.x, but breaks it for python2.7 (setup.py test actually works there). The same workaround seems to install an additional nose.egg-info in

Re: [Fink-devel] nose-py problems

On 6 Feb 2015, at 4:44 pm, Derek Homeier de...@astro.physik.uni-goettingen.de wrote: I found some issues with the build_tests run added to make the test suite for nose 1.3.4 work: setup.py build_tests makes the test run with python3.x, but breaks it for python2.7 (setup.py test actually

[Fink-devel] hdf5.9-gfortran

Hi, I think the Usage Notes for the HDF5.9 Fortran libraries are outdated or mistakenly taken over from the -oldapi variant (pointing to the %p/opt/hdf5v1.6 subdirs). Also the InstallScript is removing all executables including the Fortran wrapper h5fc which is not provided by hdf5.9. I suggest

Re: [Fink-devel] bottleneck-py-1.0.0-1

On 18 Feb 2015, at 12:44 am, Daniel Macks dma...@netspace.org wrote: as the entire test suite fails with an import error with 1.8 (apparently crashes the interpreter, thus the failure was not caught be the original Test field). I think the usual pattern for TestScript is: some command

[Fink-devel] astropy-1.0

Hi, following up on my recent question how to best get package updates into the distribution as a non-core developer, is the full package tree going to be migrated to github at some point? Then it would of course just take a pull request. In the meantime, I am attaching the update for Astropy

Re: [Fink-devel] bottleneck-py-1.0.0-1

Hi Jack, The bottleneck-py package needs updated to the 1.0.0 source in order to pass 'fink -m' against the newer numpy 1.9.x release… thanks for the patch; the Depends then also need to be updated to Depends: python%type_pkg[python], numpy-py%type_pkg[python] (= 1.9.0-1) as the entire

[Fink-devel] nightfall_1.86-2

Hi, the nightfall update is still failing with name conflicts on case-sensitive HFS (and is silently losing 2 of the files in question on insensitive ones). This can be fixed with a TarFilesRename: bh_virB.dat:bh_virBoldZ.dat bh_virV.dat:bh_virVoldZ.dat see also the last update to

Re: [Fink-devel] nightfall_1.86-2

On 18 Mar 2015, at 07:26 pm, Daniel Macks dma...@netspace.org wrote: On Wed, 18 Mar 2015 09:38:32 -0700, Alexander Hansen alexanderk.han...@gmail.com wrote: On Mar 18, 2015, at 9:08 AM, Derek Homeier de...@astro.physik.uni-goettingen.de wrote: Hi, the nightfall update is still

[Fink-devel] vtk510 missing Shlibs fields

Hi, building vtk510-5.10.1-1 with -m fails the package check due to two entries missing in the Shlibs list: 147a148 %p/lib/%N/libLSDyna.5.10.dylib5.10.0 %n (= 5.10.0-1) 231a233 %p/lib/%N/libvtkhdf5_hl.1.8.5.dylib 1.8.5 %n (= 5.10.0-1)

Re: [Fink-devel] astropy-1.0

Hanspeter, Alexander, On 25 Feb 2015, at 5:05 am, Hanspeter Niederstrasser f...@snaggledworks.com wrote: following up on my recent question how to best get package updates into the distribution as a non-core developer, is the full package tree going to be migrated to github at some

Re: [Fink-devel] vtk510 missing Shlibs fields

On 9 Apr 2015, at 7:27 pm, Alexander Hansen alexanderk.han...@gmail.com wrote: It appears to need Apple’s Legacy Java-1.6, and thus system-java16*. You can get that: https://support.apple.com/downloads/DL1572/en_US/JavaForOSX2014-001.dmg The build worked for me when I moved my Java-1.8

Re: [Fink-devel] vtk510 missing Shlibs fields

On 6 Apr 2015, at 1:03 am, Hanspeter Niederstrasser f...@snaggledworks.com wrote: building vtk510-5.10.1-1 with -m fails the package check due to two entries missing in the Shlibs list: 147a148 %p/lib/%N/libLSDyna.5.10.dylib 5.10.0 %n (= 5.10.0-1) 231a233

Re: [Fink-devel] vtk510 missing Shlibs fields

On 6 Apr 2015, at 1:03 am, Hanspeter Niederstrasser f...@snaggledworks.com wrote: building vtk510-5.10.1-1 with -m fails the package check due to two entries missing in the Shlibs list: 147a148 %p/lib/%N/libLSDyna.5.10.dylib 5.10.0 %n (= 5.10.0-1)

Re: [Fink-devel] vtk510 missing Shlibs fields

On 6 Apr 2015, at 1:03 am, Hanspeter Niederstrasser f...@snaggledworks.com wrote: building vtk510-5.10.1-1 with -m fails the package check due to two entries missing in the Shlibs list: 147a148 %p/lib/%N/libLSDyna.5.10.dylib 5.10.0 %n (= 5.10.0-1) 231a233

[Fink-devel] openmpi-1.8.7-1 build error on case-sensitive FS

Hi Jack, the 1.8 versions of Open-MPI have a couple of new files with conflicting filenames, causing the build on case-sensitive HFS+ to fail (and probably some of those files to be lost on case-insensitive ones. The vtCC file versions should be added to the case-sensitive fix, I think:

[Fink-devel] Typo in graphicsmagick-q32 dependencies

Hi, this package does not update due to a non-existing dependency in the -dev Splitoff: < Depends: graphicsmagick1321-q32-shlibs (= %V) --- > Depends: graphicsmagick1322-q32-shlibs (= %V) Cheers, Derek

[Fink-devel] hdf5.10 build failure (invalid control file)

Hi, building hdf5-bin_1.8.16 fails with env LANG=C LC_ALL=C dpkg-deb -b root-hdf5-bin-1.8.16-1 /sw/fink/10.10/stable/main/binary-darwin-x86_64/sci /sw/bin/dpkg-deb: parse error, in file `root-hdf5-bin-1.8.16-1/DEBIAN/control' near line 10 package `hdf5-bin': `Replaces' field, syntax error

[Fink-devel] Filename case conflict in imagemagick6.q16-doc-6.9.3.2-2

Hi, on a case-sensitive HFS+ build I am getting the following error Validating .deb dir /scratch.noindex/fink.build/root-imagemagick6.q16-doc-6.9.3.2-2... Error: Pathname collision on case-insensitive filesystems Offending file: /sw/share/doc/ImageMagick-6/www/api/image.html which

Re: [Fink-devel] Test script errors in matplotlib-pyXY

On 11 Feb 2016, at 1:25 am, Alexander Hansen wrote: > > urllib.error.URLError: certificate verify failed (_ssl.c:645)> > > During handling of the above exception, another exception occurred: > > Traceback (most recent call last): > File

Re: [Fink-devel] Byte-compiled files in matplotlib-py-1.5.1-2

11 Feb 2016, at 1:22 am, Alexander Hansen <alexanderk.han...@gmail.com> > wrote: > >> On Feb 10, 2016, at 15:55, Derek Homeier >> <de...@astro.physik.uni-goettingen.de> wrote: >> >> >>> On 11 Feb 2016, at 12:35 am, Alexander Hansen <alexa

Re: [Fink-devel] Byte-compiled files in matplotlib-py-1.5.1-2

On 12 Feb 2016, at 8:42 pm, Derek Homeier <de...@astro.physik.uni-goettingen.de> wrote: > > On 11 Feb 2016, at 2:12 pm, Kurt Schwehr <kurtschw...@yahoo.com> wrote: >> >> Sorry, I'm totally not following how this should be fixed. I'm feeling >> rather brai

Re: [Fink-devel] Byte-compiled files in matplotlib-py-1.5.1-2

On 16 Feb 2016, at 2:35 pm, Kurt Schwehr wrote: > > If you have a working setup for matplotlib, can you commit it? > I’ve tested and built these on 10.10 and 10.11; can submit them to the package tracker. Cheers, Derek

Re: [Fink-devel] Byte-compiled files in matplotlib-py-1.5.1-2

> On 11 Feb 2016, at 12:35 am, Alexander Hansen > wrote: > >> when building the updated matplotlib package in maintainer mode, after the >> tests are run I am >> still getting the dreaded verification error for the .deb: >> >> Error: Compiled python module points

[Fink-devel] Byte-compiled files in matplotlib-py-1.5.1-2

Hi, when building the updated matplotlib package in maintainer mode, after the tests are run I am still getting the dreaded verification error for the .deb: Error: Compiled python module points to fink build dir. Uncommenting the cleanup line does not help, because after a few Fails and

Re: [Fink-devel] numpy 1.12.0 and nose-py36

Hi Kurt, > On 19 Jan 2017, at 9:18 pm, Kurt Schwehr wrote: > > yaml-py is updated. If you want to take over matplotlib (or any of my other > packages), be my guest > thanks; I have now uploaded the matplotlib-2.0 update. If you wish, I can take it over as maintainer,

[Fink-devel] numpy 1.12.0 and nose-py36

HI, when installing the py36 version of the new numpy version (thanks for the swift update!), it refuses to build with tests enabled, as there is no py36 version of nose available yet. nose-py-1.3.7 builds out of the box on 10.11 and 10.12 by just adding 3.6 to the Type field, and numpy-py36

Re: [Fink-devel] numpy 1.12.0 and nose-py36

have also just submitted two package requirements for matplotlib-2.0.0 to the tracker, which you can take over as maintainer or leave me in, whatever you prefer. Cheers, Derek > > On Tuesday, January 17, 2017 7:03 AM, Derek Homeier > <de...@ast

[Fink-devel] Filename case error in openssl110-dev-1.1.0a-1 manpage (MD5.3)

Hi Daniel, subject already tells most of the story: the capitalisation workaround in openssl110-dev incorrectly copies the MD5.3 manpage over in lowercase, which fails on a case-sensitive FS. I think this should fix it: diff -Nurd

[Fink-devel] boost1.63-nopython fails validation

Hi, building the package with ‘-m’ fails on a missing Shlibs entry (the other boost1.63 variants build fine): Validating .deb dir /scratch.noindex/fink.build/root-boost1.63-nopython-1.63.0-1... Error: package contains the shared library /sw/opt/boost-1_63/lib/libboost_fiber-mt.dylib

Re: [Fink-devel] boost1.63-nopython fails validation

On 14 Jan 2017, at 3:14 pm, Hanspeter Niederstrasser wrote: > > This has been fixed by disabling the boost_filter library. If someone > requests it in the future (or we stop supporting 10.9 or 10.10), I'll > re-enable it. Tested and found working here on 10.11 and

Re: [Fink-devel] boost1.63-nopython fails validation

> On 11 Jan 2017, at 11:46 am, Hanspeter Niederstrasser > wrote: > >> building the package with ‘-m’ fails on a missing Shlibs entry (the other >> boost1.63 variants build fine): >> >> Validating .deb dir >>

Re: [Fink-devel] boost1.63-nopython fails validation

On 11 Jan 2017, at 12:28 pm, Hanspeter Niederstrasser wrote: > >> + LIBDIR2= >> + ./b2 -d2 'cxxflags=-std=c++11 -MD -I/sw/include' -j4 --without-python >> --prefix=/sw --libdir=/sw/opt/boost-1_63/lib >> --includedir=/sw/opt/boost-1_63/include/boost

Re: [Fink-devel] OpenSSL 1.0.2 certificates

[cc’ing Daniel as OpenSSL maintainer] > On 4 Jan 2017, at 12:47 pm, Hanspeter Niederstrasser <f...@snaggledworks.com> > wrote: > > On 1/2/17 9:19 AM, Derek Homeier wrote: >> Hi, >> >> I want to check if I am doing something very stupid here, since I am un

[Fink-devel] OpenSSL 1.0.2 certificates

Hi, I want to check if I am doing something very stupid here, since I am unable to properly use any apps linking to openssl100-shlibs (among others wget and python) since approximately the update to openssl-1.0.2, as it refuses to accept almost any host certificate: ariel:15579> curl -O