Re: [Freesurfer] FW: correcting for brain size

2015-05-22 Thread David Vazquez
were diminished to nothing. Hope this helps. -David Vazquez PhD candidate in Cognitive Neuroscience University of California, Riverside NSF GRFP fellow On Fri, May 22, 2015 at 6:16 AM Hirsch, Gabriella gabriella_hir...@meei.harvard.edu wrote: HI FS experts, I haven’t heard back and am

Re: [Freesurfer] recon-all for multiple subjects using for loop

2013-04-15 Thread David Vazquez
for Freesurfer and the subjects directory, insert the following: for SubjectName in `cat *subs.txt*` do recon-all -s $SubjectName -all -qcache done Make sure you have the ` (not ') on either side of the cat command or it won't work. This works for us and we have 200 subjects. Good luck, -David

[Freesurfer] T-value intensity overlayed onto 2009 Destrieux Parcellations

2012-08-14 Thread David Vazquez
intensity, instead of voxel by voxel, as was done by Watkins et al. (2001). Has anyone done this? Or have a clue where to find the relevant options? Thank you, David Vazquez Watkins, K.E., Paus, T., Lerch, J.P., Zijdenbos, A., Collins, D.L., Neelin, P., Taylor, J., Worsley., K.J., and Evans, A.C