[Freesurfer] Surface vertex tkr-ras to native T1 RAS without volume files

2024-04-11 Thread Dipterix Wang
External Email - Use Caution Dear FreeSurfer devs, I'm writing a program in JavaScript that converts FreeSurfer surface (mesh) files to other formats, which require the vertices to sit in scanner RAS coordinates. Right now I'm relying on the FreeSurfer *brain.finalsurf.mgz* or

Re: [Freesurfer] Manual/reproduce conform

2024-01-11 Thread Dipterix Wang
onform-dc. Would that fix your problem? > > On 12/21/2023 9:30 AM, Dipterix Wang wrote: > > External Email - Use Caution > Dear FreeSurer Wizards, > > I'm trying to run the recon-all command on one of my template brains such > that the resulting Norig and Torig are i

[Freesurfer] Manual/reproduce conform

2023-12-21 Thread Dipterix Wang
External Email - Use Caution Dear FreeSurer Wizards, I'm trying to run the recon-all command on one of my template brains such that the resulting Norig and Torig are identical. I understand that fs always conforms the MRI to 256^3 before segmentation. I wonder if there is any way