Hi,
I downloaded FreeSurfer development version built on Sep 20. Then I ran
the "trac-all" for the same set of DWI data four times. The volume and
averaged DTI parameters of the fiber pathways, which found in the file
~/sub/dpath/*_PP_avg33_mni_flt/pathstats.overall.txt, are different for
for the new version.
Thanks!
a.y
On Tue, 30 Aug 2016, Kang, XJ wrote:
Hi,
I am trying to computer the changes of cortical parcellations and fiber
pathways using FreeSurfer v5.3 and Tracula (2014/05/26 update) . I
copied
the anatomical and DWI images from the same scan session into five
Hi,
I am trying to computer the changes of cortical parcellations and fiber
pathways using FreeSurfer v5.3 and Tracula (2014/05/26 update) . I
copied the anatomical and DWI images from the same scan session into
five directories. Run recon-all and trac-all on the 5 same data sets, in
order
Fischl wrote:
what values does the wmparc have?
On Thu, 7 Jul 2016, Kang, XJ wrote:
Thank you for your reply.
The image "wmparc.mgz" does not have the correct values. I am not
sure if
that because of the interruption of the procedures or not. Also I
need to
use some other files.
em.
On 7/7/2016 11:11 AM, Bruce Fischl wrote:
Hi XJ
this is a known problem but we haven't gotten to fixing it yet. Do you
need it to complete that step? It is pretty close to the end so it may
be that the error doesn't effect you
cheers
Bruce
On Thu, 7 Jul 2016, Kang, XJ wrote:
Hi,
I
Hi,
I am trying to inflate right hemisphere only using the commands:
recon-all -autorecon2 -hemi rh -subjid 160526
recon-all -autorecon3 -hemi rh -subjid 160526
The inflation stopped at the step:
mris_volmask --label_left_white 2 --label_left_ribbon 3
--label_right_white 41
