Re: [Freesurfer] mri_segstats question

cropped out. What command were you trying > to use? > > On 11/18/2020 2:39 AM, RENXI LI wrote: >> External Email - Use Caution >> >> Hi Freesurfer experts: >> >> I am trying to extract the mean-time series from the functional image using >>

[Freesurfer] mri_segstats question

External Email - Use Caution Hi Freesurfer experts: I am trying to extract the mean-time series from the functional image using mri_segstats. However, the cerebral white matter signals were cropped out in my functional images, and the regions that I am trying to extract signal

Re: [Freesurfer] Striatum Mask for Choi et al 2012 {Disarmed}

ens (I hope my memory is correct!) in subject's native space to mask the projected Choi's parcellation. Regards, Thomas On Sun, Nov 15, 2020 at 4:16 PM RENXI LI mailto:rli...@wisc.edu>> wrote: External Email - Use Caution Hi Freesurfer Experts: In $FREESURFER_HOME/average

[Freesurfer] Striatum Mask for Choi et al 2012

External Email - Use Caution Hi Freesurfer Experts: In $FREESURFER_HOME/average/Choi_JNeurophysiol12_MNI152 directory, there are a striatum parcellation masks based on functional connectivities to the cortical networks by Yeo et al 2011. I would like to register this striatum

Re: [Freesurfer] mri_vol2vol usage

:36 AM, RENXI LI wrote: External Email - Use Caution So I think my functional image processed by SPM12 does not come with any registration matrix file that is required for mri_vol2vol, is there a way to get around with that matrix? Best, Renxi On Nov 11, 2020, at 10:12 AM, Douglas N.

Re: [Freesurfer] mri_vol2vol usage

ote: > > Try --help to get docs and examples > > On 11/8/2020 5:07 PM, RENXI LI wrote: >> External Email - Use Caution >> >> Hi FreeSurfer Experts: >> >> I am trying to register the subject’s functional image processed by SPM12 to >> the Fr

[Freesurfer] mri_vol2vol usage

External Email - Use Caution Hi FreeSurfer Experts: I am trying to register the subject’s functional image processed by SPM12 to the Freesurfer subject anatomical space using mri_vol2vol, what would be the required arguments in this case? Best, Renxi

[Freesurfer] Lazy Symbol binding errors

External Email - Use Caution Hi, I have downloaded the FreeSurfer 6.0.0 from https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Darwin-OSX-stable-pub-v6.0.0.dmg,but I still have a lazy symbol binding error as below: dyld: lazy symbol binding failed: Symbol

[Freesurfer] Solving the Lazy Symbol binding errors

External Email - Use Caution Hi, I was trying to get through the lazy symbol binding errors and I have disable the SIP. I have the following errors, would you mind taking a look to see what might goes wrong? Build is freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c Running