Re: [Freesurfer] Create .Qdecrc file

2021-03-08 Thread Tien Pham
External Email - Use Caution Dear Douglas, Thank you very much for your suggestion. Sincerely, Tien Pham On Tue, Mar 9, 2021 at 12:55 AM Douglas N. Greve wrote: > We have abandonded QDEC, so try using the command line stream > http://secure-web.cisco.com/11tn2HXIVZKcF0

[Freesurfer] pial_lgi does not appear in QDEC

2021-03-03 Thread Tien Pham
still not worked. Can you help me please? Thank you. Best regards, Tien Pham ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Create .Qdecrc file

2021-03-03 Thread Tien Pham
to your response. Thank you very much. Best regards, Tien Pham ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Extract specific LGI and Volume values

2020-03-04 Thread Tien Pham
0 8:17 PM, Tien Pham wrote: > > External Email - Use Caution > Thank you for your email. > I tried to load the label with qdec and freeview and both were not worked. > When i tried with qdec, It said '' load the surface first '' then I did > but It did not work and showed s

Re: [Freesurfer] Extract specific LGI and Volume values

2020-02-18 Thread Tien Pham
with qdec, qdec was closed suddenly without any notification. I am looking forward to hearing from you. On Fri, Feb 14, 2020 at 11:44 PM Douglas N. Greve wrote: > What tool are you trying to use to load the label? What happens when you > try? > > On 2/7/2020 10:11 PM, Tie

Re: [Freesurfer] Extract specific LGI and Volume values

2020-02-07 Thread Tien Pham
Douglas N. Greve wrote: > sorry for the delay. You will have to use mri_label2label to map the label > from the fsaverage space to the individual space > > > On 1/31/2020 10:01 PM, Tien Pham wrote: > > External Email - Use Caution > Can you read my message? > I

Re: [Freesurfer] Extract specific LGI and Volume values

2020-01-31 Thread Tien Pham
2020 7:35 PM, Tien Pham wrote: > > External Email - Use Caution > Thank you for your response. > > I used longitudinal pipeline for my data set with two time points and > calculated the LGI differences between them. > Then I created the label based on significant clusters

Re: [Freesurfer] Extract specific LGI and Volume values

2020-01-31 Thread Tien Pham
2020 7:35 PM, Tien Pham wrote: > > External Email - Use Caution > Thank you for your response. > > I used longitudinal pipeline for my data set with two time points and > calculated the LGI differences between them. > Then I created the label based on significant clusters

Re: [Freesurfer] Extract specific LGI and Volume values

2020-01-28 Thread Tien Pham
External Email - Use Caution Thank you for your response. I used longitudinal pipeline for my data set with two time points and calculated the LGI differences between them. Then I created the label based on significant clusters which showed in QDEC. I tried to load the label on

Re: [Freesurfer] Extract specific LGI and Volume values

2020-01-21 Thread Tien Pham
el. > How was it created? > > On 1/16/2020 11:51 PM, Tien Pham wrote: > > External Email - Use Caution > Thank you for your help. > I cannot load the label on surface, this is the error: > > [toyama-no-iMac:/applications/freesurfer/subjects] toyama% qdec >

Re: [Freesurfer] Extract specific LGI and Volume values

2020-01-16 Thread Tien Pham
I find it? On Fri, Jan 17, 2020 at 1:17 PM Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu> wrote: > Is the label valid? Can you load it on a surface? How many points are in > it? > > On 1/16/2020 9:51 PM, Tien Pham wrote: > > External Email - Use Caution >

Re: [Freesurfer] Extract specific LGI and Volume values

2020-01-16 Thread Tien Pham
mean to > take the background) > > On 1/16/2020 7:07 PM, Tien Pham wrote: > > External Email - Use Caution > Thank you very much for your e-mail. > I tried, but this '' --o '' is unknown showing in terminal and the '' --id > '' flag is subject name? > Could you please

Re: [Freesurfer] Extract specific LGI and Volume values

2020-01-16 Thread Tien Pham
> > The mean value will be in the "Mean" column of the sum.dat > > > On 1/14/2020 7:08 PM, Tien Pham wrote: > > External Email - Use Caution > Dear FreeSurfer Experts, > > I am Tien Pham, I am stucked at this situation. I calculated longitudinal > LGI c

[Freesurfer] Extract specific LGI and Volume values

2020-01-14 Thread Tien Pham
External Email - Use Caution Dear FreeSurfer Experts, I am Tien Pham, I am stucked at this situation. I calculated longitudinal LGI changes in my data set with two time points using longitudinal pipeline. Now I would like to extract the regional LGI and gray matter volume in my

[Freesurfer] Extract specific LGI values

2020-01-11 Thread Tien Pham
External Email - Use Caution Dear FreeSurfer Experts, I am Tien Pham, I am stucked at this situation. I calculated longitudinal LGI changes in my data set with two time points using longitudinal pipeline. Now I would like to extract the regional LGI and gray matter volume in my