[Freesurfer] freesurfer subcortical segmentation

2020-05-19 Thread ZhangBo
External Email - Use Caution Hi teams, Does freesurfer supports calculate subcortical volumes like globus pallidus internus, globus pallidus externa, subthalamic nucleus , ventral intermedius nucleus, like these areas? Thanks___

[Freesurfer] why fsaverage fold is a "link folder"

2020-05-17 Thread ZhangBo
External Email - Use Caution Hi teams, For recon-all in parallel, why fsaverage fold is a "link folder"? I run recon-all in one computer (Ubuntu), and copy the result to another computer for analysis. And error happened when I need to use data in fsaverage folder. Thanks

[Freesurfer] command not found: tksurfer

2020-05-13 Thread ZhangBo
External Email - Use Caution Hi teams, After installing freesurfer-7.0.0 in MacOS 10.15.4, I followed the testing guid in https://surfer.nmr.mgh.harvard.edu/fswiki/TestingFreeSurfer. It is ok for freeview, however for tksurfer and tkmedit, I get errors "zsh: command not found:

[Freesurfer] Could not login in "https://mail.nmr.mgh.harvard.edu/NMRAuth/GLOBAL/LOGIN"

2020-03-05 Thread ZhangBo
External Email - Use Caution Hi teams, I could not login in "Could not login in "https://mail.nmr.mgh.harvard.edu/NMRAuth/GLOBAL/LOGIN";. Thanks. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] ubuntu: run freesurfer in two terminal

2020-03-04 Thread ZhangBo
External Email - Use Caution Hello FreeSurfer Developers, My computer doesn't support cuda. To speed up data processing, could I open two terminal, and in each of them, I first runing: $> export FREESURFER_HOME=/usr/local/freesurfer $> export