How did you change the orientation?
On 12/9/2020 4:16 AM, Nederpelt, D. van (David) wrote:
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On Behalf Of Greve, Douglas N.,Ph.D.
Sent: maandag 7 december 2020 16:21
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Does segmentation depend on input orientation
{Disarmed}
Yes, this can happen (and happens to almost all neuroimaging packages). As
with any optimiz
Yes, this can happen (and happens to almost all neuroimaging packages). As
with any optimization program, where it ends up depends a little on where it
starts.
On 12/3/2020 6:31 AM, Nederpelt, D. van (David) wrote:
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Hi,
I ran recon-all twice, once on a T1w image (nifti) with RAS orientation, and
once on this image converted to LAS orientation
I would expect the output (especially in volume) to be equal, because
freesurfer reconverts it to its own orientation if
