freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Ani Varjabedian
a...@nmr.mgh.harvard.edu
Sent: Friday, May 1, 2015 7:42 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Incomplete Cerebellum Segmentation
Hi Jessica,
If you want to regenerate the aseg and surfaces you will need
Hi Jessica,
If you want to regenerate the aseg and surfaces you will need to run the
subject through the rest of the recon-all pipeline (autorecon2 and
autorecon3).
The -skullstrip is only going to redo that specific step.
Thank you,
Ani Varjabedian
On 04/30/2015 02:00 PM, Jessica Lynn
Hi Freesurfers,
I've just completed recon-all -all and pulled up the brain in Freesurfer V5.0
on my Linux machine, and realized I needed to run the following command
recon-all -skullstrip -wsthresh 30 -clean-bm -no-wsgcaatlas -s sub122.fs to
pick up cerebellum that was missing. After the
