Dear experts, we have a problem with installation of QA-Tools. It seems that it is not because of ImageMagick and Gawk not being properly installed, but rather there seems to be some problems with environmental variables. For example, when changing into QA-Tools directory in the terminal and starting recon_checker, we get "command not found". When recon_checker is prompted with full path information, the parameters are listed in the "help" condition. So it seems that the application could be found. However, as soon as parameter "-s" and a subject variable is entered to start the quality assessment of one subject, we get: "QA_TOOLS: undefined variable". Could you specify which information should be included in the ".profile" file? We are currently working with bash shell.
Thanks very much for any hints and comments, Volker _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
