ited by available developer
> time.
>
>
>
> BW,
>
> Henry
>
>
>
> *From: *Georgios Argyropoulos
> *Date: *Friday, 12 April 2024 at 11:04
> *To: *Tregidgo, Henry
> *Cc: *freesurfer@nmr.mgh.harvard.edu
> *Subject: *Re: [Freesurfer] Question on using
@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Question on using thalseg_1.1.h5
many thanks, Henry, that's super helpful. Btw, I came across the
segmentThalamicNuclei_DTI.sh here
(https://secure-web.cisco.com
ue to this is the deprecation warning
> mentioning numpy version 1.25 as the version in fspython is 1.24.3
>
>
>
> *From: *Georgios Argyropoulos
> *Date: *Thursday, 11 April 2024 at 17:24
> *To: *freesurfer@nmr.mgh.harvard.edu ,
> Tregidgo, Henry
> *Subject: *Re: [Fr
: Georgios Argyropoulos
Date: Thursday, 11 April 2024 at 17:24
To: freesurfer@nmr.mgh.harvard.edu , Tregidgo,
Henry
Subject: Re: [Freesurfer] Question on using thalseg_1.1.h5
⚠ Caution: External sender
Many thanks and apologies, Henry - I figured it out... I stupidly replaced your
improved
External Email - Use Caution
Many thanks and apologies, Henry - I figured it out... I stupidly replaced
your improved segmentation script in both the scripts and the bin directory
instead of only replacing the former.
many thanks for your time, much appreciated
g
you been able to run the segmentation using the packaged model?
Best wishes,
Henry
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Georgios Argyropoulos
Date: Thursday, 4 April 2024 at 00:53
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Question on using thalseg_1.1.h5
External Email - Use Caution
Dear Colleagues,
Hope you're well.
I have been trying to use the thalseg_1.1.h5 patch (MRI Segment Thalamic
Nuclei CNN model v1.1 update). I use the following command:
mri_segment_thalamic_nuclei_dti_cnn --t1 mri/norm.dwispace.mgz --aseg
