[Freesurfer] Using FSL commands through Matlab (Linux)

2015-08-04 Thread Albrecht, Daniel S.
Hello, Sorry if this isn’t the right forum for the question, but not sure where to direct it. I’m trying to incorporate some FSL commands into a Matlab script. I’m using a Linux machine and running Matlab 7.11.0 (2010b). I tried to access the FSL toolbox through Matlab using:

Re: [Freesurfer] Using FSL commands through Matlab (Linux)

2015-08-04 Thread Watson, Christopher
] Sent: Tuesday, August 04, 2015 4:45 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Using FSL commands through Matlab (Linux) I don't think that will work because the shell where FSLDIR gets set is not the same shell as that of the system command. Try putting those two in the same

Re: [Freesurfer] Using FSL commands through Matlab (Linux)

2015-08-04 Thread Douglas N Greve
I don't think that will work because the shell where FSLDIR gets set is not the same shell as that of the system command. Try putting those two in the same string and then running system on that On 08/04/2015 04:36 PM, Albrecht, Daniel S. wrote: Hello, Sorry if this isn’t the right forum

Re: [Freesurfer] Using FSL commands through Matlab (Linux)

2015-08-04 Thread Watson, Christopher
To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Using FSL commands through Matlab (Linux) Hello, Sorry if this isn’t the right forum for the question, but not sure where to direct it. I’m trying to incorporate some FSL commands into a Matlab script. I’m using a Linux machine and running