Re: [Freesurfer] extracting mask for basal ganglia, deep grey, and centrum semiovale

2020-12-02 Thread miracle ozzoude
External Email - Use Caution Nevermind. I didn't see your initial reply Doug. Thanks alot. Best, Paul On Wed, Dec 2, 2020 at 1:35 PM miracle ozzoude wrote: > Any help with this will be greatly appreciated. > Thanks. > > -- Forwarded message - > From: miracle

Re: [Freesurfer] extracting mask for basal ganglia, deep grey, and centrum semiovale

2020-11-29 Thread Greve, Douglas N.,Ph.D.
We don't have a centrum semiovale label in FS. You could try using the (Left,Right)-UnsegmentedWhiteMatter in the wmparc.mgz On 11/27/2020 9:28 AM, miracle ozzoude wrote: External Email - Use Caution Hello Experts, I did like to create a mask for basal ganglia, deep grey matter, and

[Freesurfer] extracting mask for basal ganglia, deep grey, and centrum semiovale

2020-11-27 Thread miracle ozzoude
External Email - Use Caution Hello Experts, I did like to create a mask for basal ganglia, deep grey matter, and centrum semiovale. I know how to extract the mask for the first 2 (using aseg.mgz) however, how do I extract the last one. What mask should I use to extract the