Re: [Freesurfer] fspalm contrasts {Disarmed}

2020-12-23 Thread Greve, Douglas N.,Ph.D.
Oh, sorry, I did not include that as a possibility. FSL codes F-contrasts differently than t-contrasts (FS codes them in the same way, just a matrix). If you want to do it this way, you'll have to use PALM by itself without the fspalm frontend. fspalm should still create files that can be

[Freesurfer] fspalm contrasts {Disarmed}

2020-12-21 Thread Marina Fernández
External Email - Use Caution Dear experts, To correct multiple comparisons on the surface I'm using fspalm. I know that this command internally transforms the design contrast and desing matrix from the Freesurfer format to the fsl format so that FSL-PALM understands the input.