Re: [Freesurfer] incongruent coordinates in freeview and *sig.cluster.summary

2014-04-29 Thread Douglas N Greve
The coords in the summary file are for the white surface, not the inflated. Try freeview again using the white surface On 04/29/2014 07:50 AM, Rujing Zha wrote: Hi doug, Thanks doug. I saw the sig.mgh in freeview by typing this: freeview -f

Re: [Freesurfer] incongruent coordinates in freeview and *sig.cluster.summary

2014-04-28 Thread Douglas N Greve
On 04/26/2014 07:06 AM, charujing123 wrote: Hi all, I have done group analysis and see it in freeview. Also I can see my sig.cluster.summary file to find clusters those survived. As I know, the MNIX MNIY MNIZ in the cluster summary file is coordinates for the maximum. The coordinate

[Freesurfer] incongruent coordinates in freeview and *sig.cluster.summary

2014-04-26 Thread charujing123
Hi all, I have done group analysis and see it in freeview. Also I can see my sig.cluster.summary file to find clusters those survived. As I know, the MNIX MNIY MNIZ in the cluster summary file is coordinates for the maximum. The coordinate system is MNI305. Also I input the vertex number at the