Re: [Freesurfer] labels in the surface {Disarmed}

External Email - Use Caution Hello, i used this code: mri_vol2surf --src /home/neuroimage/fsl/FreeSurfer/AAL.nii --regheader MNI --projfrac 0.5 --hemi lh --out /home/neuroimage/fsl/FreeSurfer/AAL-lh.mgh Also i tried to map the AAL into the surface of fsaverage with: mri_vol2surf

Re: [Freesurfer] labels in the surface

This might be the way it is given that the AAL is volume-based and you are trying to put it on the surface. What is your vol2surf command? On 12/10/2020 6:59 AM, Alberto Del Cerro Leon wrote: External Email - Use Caution Hello Freesurfer team With your help i obtained a AAL atlas on

Re: [Freesurfer] Labels from Pial surface

What about volume? For surface, it seems that it is ok. On Tue, Aug 22, 2017 at 1:29 AM Douglas N Greve wrote: > > whatever annotation you give it (eg, aparc). There are not separate > labels for the inner and the outer. The distinction is in the xyz > coordinates. If

Re: [Freesurfer] Labels from Pial surface

whatever annotation you give it (eg, aparc). There are not separate labels for the inner and the outer. The distinction is in the xyz coordinates. If you don't give it a surface, it will use the xyz coords from the inner (white) surface. If you give it --surface pial, it will use the xyz

Re: [Freesurfer] Labels from Pial surface

And what labels does this mri_annotation2label give? Does it give the outer cortical boundary as well? On Tue, Aug 22, 2017 at 12:19 AM Douglas N Greve wrote: > when you run mri_annotation2label you can specify the surface > (--surface). By default, it uses white, but

Re: [Freesurfer] Labels from Pial surface

when you run mri_annotation2label you can specify the surface (--surface). By default, it uses white, but you can specify pial instead On 08/21/2017 11:33 AM, Fereshte wrote: > Hello FreeSurfer developers, > Is it possible to have the segmentation labels after the pial surface > is done in

[Freesurfer] Labels from Pial surface

Hello FreeSurfer developers, Is it possible to have the segmentation labels after the pial surface is done in FreeSurfer? I mean once you do the topology correction and expand the inner cortical boundary to make the pial surface ; is it possible to have the inner and outer cortical boundaries as