Re: [Freesurfer] output of mri_surf2vol looks fragmented

2020-07-08 Thread Sam W
External Email - Use Caution Thanks Doug. I added --ribbon ribbon.gz to the mri_vol2surf command but the output was exactly the same as omitting it. I think mri_vol2surf automatically loads ribbon.mgz when I include the --subject sub01. Just for my understanding, why shouldn't

Re: [Freesurfer] output of mri_surf2vol looks fragmented

2020-07-08 Thread Douglas N. Greve
They will not look exactly the same. Try adding --ribbon ribbon.mgz On 7/6/2020 10:47 PM, Sam W wrote: External Email - Use Caution Hi, I'm trying to understand mri_surf2vol and mri_vol2surf but I'm not able to get the expected output when converting a surface back to volume. These

[Freesurfer] output of mri_surf2vol looks fragmented

2020-07-06 Thread Sam W
External Email - Use Caution Hi, I'm trying to understand mri_surf2vol and mri_vol2surf but I'm not able to get the expected output when converting a surface back to volume. These are the commands I'm using: mri_vol2surf --mov lh_fusiform_pre.nii.gz --ref mri/orig.mgz --regheader