Hi,
If the surfaces are 'done' and we update/edit the the aseg.mgz with
recon-all -surfsegedit
and then run recon-all -autorecon2-cp -autorecon3
to update the .stats, this also creates new wm and pial surfaces that may be
different to those used for -surfsegedit. Is that right?
As another
Hi,
This is a repost, hope someone can please comment?
Thanks.
On Wed, 06 May 2015 00:07:17 -0700 prasser lt;pras...@zoho.comgt; wrote
Thanks Martin. The concern I have with using -autorecon2-cp -autorecon3 after
-surfsegedit is that, new surfaces are created during
Thanks Martin. The concern I have with using -autorecon2-cp -autorecon3 after
-surfsegedit is that, new surfaces are created during -autorecon2-cp
-autorecon3 so that aseg and the surfaces are always out of step with each
other.
Any suggestions on how I could test the validity of the method
Yes,
if this is in the long, you also need to add the -long …. stuff
Martin
On Apr 28, 2015, at 12:46 AM, prasser pras...@zoho.com wrote:
Thanks for your response, not sure if I've quite got it yet.
So, after the surfaces are done and we update/edit the the aseg.mgz with say,
I would think autorecon2-cp autorecon3 would be fine, but maybe Martin can
comment?
On Wed, 22 Apr 2015, prasser
wrote:
Repost.Thanks.
On Mon, 20 Apr 2015 16:35:29 -0700 pras...@zoho.com wrote
Thank you again for your reply.
For editing aseg.mgz, as mentioned in
Repost.Thanks.
On Mon, 20 Apr 2015 16:35:29 -0700 lt;pras...@zoho.comgt; wrote
Thank you again for your reply.
For editing aseg.mgz, as mentioned in
https://surfer.nmr.mgh.harvard.edu/fswiki/TkMeditGuide/TkMeditWorkingWithData/FreeviewSegmentations
it does suggest using
Hi
so take a look at
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TroubleshootingData
where the entry points are described ( for brainmask and finalsurfs
-autorecon-pial should be OK, for aseg it says to use
-autorecon2-noaseg )
Also this page
Thank you again for your reply.
For editing aseg.mgz, as mentioned in
https://surfer.nmr.mgh.harvard.edu/fswiki/TkMeditGuide/TkMeditWorkingWithData/FreeviewSegmentations
it does suggest using -autorecon2-noaseg, but from what I can see this does
not update the aparc+aseg.mgz and associated
