Hi FreeSurfer,
I would like to know the x,y,z- coordinates of all atlas ROIs in Talairach
space.
I have the x, y z coordinates of the voxel time series of an fMRI task. I
would like to know which of these voxels belong to a particular ROI.
Can you give me advice, please?
Thank you.
Peka
Hi FreeSurfer,
My fMRI time series come from Brain Voyager and x,y,z-coordinates are in
Talairach space.
Thank you.
Peka
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The
Dear FreeSurfer experts,
I would like to get labels, get them in MNI305 space and to
visualize them on the brain.mgz, which to be in MNI305.
I used following:
a) To get labels in MNI
$FREESURFER_HOME/bin/make_average_subject --out asub1
--subjects sub1
#creat labels
mkdir
External Email - Use Caution
Yes.
On Wed, Jul 8, 2020 at 10:01 AM Douglas N. Greve
wrote:
> Does that file exist?
>
> On 7/7/2020 8:59 AM, Peka Savayan wrote:
>
> External Email - Use Caution
> Dear experts,
>
> I try to run recon-all using FS 7.
Can you send the recon-all.log file?
>
> On 7/9/2020 1:25 PM, Peka Savayan wrote:
>
> External Email - Use Caution
> I can open it. Can you? No permission required to my knowledge.
>
> On Thu, Jul 9, 2020 at 11:53 AM Douglas N. Greve
> wrote:
>
>> Do you have
External Email - Use Caution
I can open it. Can you? No permission required to my knowledge.
On Thu, Jul 9, 2020 at 11:53 AM Douglas N. Greve
wrote:
> Do you have read permission to it?
>
> On 7/8/2020 2:25 PM, Peka Savayan wrote:
>
> External Email - Us
External Email - Use Caution
Dear experts,
I try to run recon-all using FS 7.1.0 on a cluster with OS CentOS6.
I got the recon-all.log error message:
ERROR: cannot find
/share/apps/freesurfer-7.1.0/average/RB_all_2008-03-26.gca
Thanks for your help.
Sincerely,
Peka
--
Peka
