Re: [Freesurfer] GLM_ functional connectivity analysis

2015-04-28 Thread Douglas Greve
...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, April 27, 2015 4:10 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] GLM_ functional connectivity analysis can you send the two command lines you ran? On 04/27/2015 02:53 PM, Alshikho

Re: [Freesurfer] GLM_ functional connectivity analysis

2015-04-28 Thread Alshikho, Mohamad J.
-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve Sent: Tuesday, April 28, 2015 10:39 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] GLM_ functional connectivity analysis The mri_glmfit command below is for the left hemisphere. so I don't understand when you later say that you

Re: [Freesurfer] GLM_ functional connectivity analysis

2015-04-28 Thread Douglas Greve
...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, April 27, 2015 4:10 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] GLM_ functional connectivity analysis can you send the two command lines you ran? On 04/27/2015 02:53 PM, Alshikho

Re: [Freesurfer] GLM_ functional connectivity analysis

2015-04-28 Thread Douglas N Greve
10:47 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] GLM_ functional connectivity analysis What was the exact command for the right hemi? On 4/28/15 10:45 AM, Alshikho, Mohamad J. wrote: Hi Doug, Thank you for your support. I ran this command on the left hemisphere

Re: [Freesurfer] GLM_ functional connectivity analysis

2015-04-28 Thread Alshikho, Mohamad J.
...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve Sent: Tuesday, April 28, 2015 10:47 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] GLM_ functional connectivity analysis What was the exact command for the right hemi? On 4/28/15 10:45 AM, Alshikho

Re: [Freesurfer] GLM_ functional connectivity analysis

2015-04-27 Thread Douglas N Greve
can you send the two command lines you ran? On 04/27/2015 02:53 PM, Alshikho, Mohamad J. wrote: Hi Doug, I am working on a GLM for functional connectivity analysis. I made simple FSGD file for two groups + NO covariates then I ran the following command line on the right hemisphere and the

Re: [Freesurfer] GLM_ functional connectivity analysis

2015-04-27 Thread Alshikho, Mohamad J.
...@nmr.mgh.harvard.edu] Sent: Monday, April 27, 2015 4:10 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] GLM_ functional connectivity analysis can you send the two command lines you ran? On 04/27/2015 02:53 PM, Alshikho, Mohamad J. wrote: Hi Doug, I am working on a GLM for functional

[Freesurfer] GLM_ functional connectivity analysis

2015-04-27 Thread Alshikho, Mohamad J.
Hi Doug, I am working on a GLM for functional connectivity analysis. I made simple FSGD file for two groups + NO covariates then I ran the following command line on the right hemisphere and the left hemisphere. mri_glmfit --y ces.nii.gz --wls cesvar.nii.gz --fsgd fsgd --C