Re: [Freesurfer] T1 white matter segmentation

2014-10-21 Thread Bruce Fischl
[fis...@nmr.mgh.harvard.edu] Sent: Friday, October 17, 2014 12:05 PM To: Freesurfer support list Subject: Re: [Freesurfer] T1 white matter segmentation first you have to run recon-all with the T1 On Fri, 17 Oct 2014, Alshikho, Mohamad J. wrote: Hi Bruce, The T2 is very good and better

Re: [Freesurfer] T1 white matter segmentation

2014-10-20 Thread Alshikho, Mohamad J.
...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Friday, October 17, 2014 12:05 PM To: Freesurfer support list Subject: Re: [Freesurfer] T1 white matter segmentation first you have to run recon-all with the T1 On Fri, 17 Oct 2014, Alshikho

Re: [Freesurfer] T1 white matter segmentation

2014-10-17 Thread Bruce Fischl
Hi Mohamad recon-all requires a T1, so use it. If the T2 is good quality you can use it to avoid dura in a subsequent invocation of recon-all with the -T2pial flag cheers Bruce On Fri, 17 Oct 2014, Alshikho, Mohamad J. wrote: Hi FS Experts, The T1 and T2 images in my data set are as the

Re: [Freesurfer] T1 white matter segmentation

2014-10-17 Thread Alshikho, Mohamad J.
...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Friday, October 17, 2014 11:52 AM To: Freesurfer support list Subject: Re: [Freesurfer] T1 white matter segmentation Hi Mohamad recon-all requires a T1, so use it. If the T2 is good quality you can use it to avoid dura

Re: [Freesurfer] T1 white matter segmentation

2014-10-17 Thread Bruce Fischl
From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Friday, October 17, 2014 11:52 AM To: Freesurfer support list Subject: Re: [Freesurfer] T1 white matter segmentation Hi