Re: [Freesurfer] holes in inflated using mris_label2annot

2014-08-02 Thread April Clausen
The command line for mapping the labels from fsaverage to the subject (april) was, mri_label2label —srcsubject fsaverage —srclabel rh.aprilOne.label —trgsubject april —trglabel rh.aprilOne.label —hemi rh —regmethod surface this was repeated 5 more times for labels rh.aprilTwo.label to

Re: [Freesurfer] holes in inflated using mris_label2annot

2014-08-02 Thread Bruce Fischl
Hi April what version are you using and what operating system? There was a bug that caused holes in labels that we fixed not that long ago. cheers Bruce On Sat, 2 Aug 2014, April Clausen wrote: The command line for mapping the labels from fsaverage to the subject (april) was,

Re: [Freesurfer] holes in inflated using mris_label2annot

2014-08-01 Thread Douglas N Greve
what was your command line? On 07/21/2014 03:43 PM, April Clausen wrote: Hi Dr. Greve, I tried to upload the images with the Martinos Centre Dropbox but I could not activate the dropbox … so the images are attached. The 6 labels and annot file were created on fsaverage and the image shows

[Freesurfer] holes in inflated using mris_label2annot

2014-07-14 Thread April Clausen
When viewed on the inflated surface in tksurfer, we are seeing “holes” in annot files we created defining our own ROIs. We first created 6 label files on fsaverage then mapped these 6 label files to 5 different subjects using mri_label2label. Once the 6 label files were mapped to each subject,

Re: [Freesurfer] holes in inflated using mris_label2annot

2014-07-14 Thread Douglas N Greve
can you send a picture? On 07/14/2014 02:38 PM, April Clausen wrote: When viewed on the inflated surface in tksurfer, we are seeing “holes” in annot files we created defining our own ROIs. We first created 6 label files on fsaverage then mapped these 6 label files to 5 different subjects