Re: [Freesurfer] mri_segstats flags

2015-04-13 Thread Douglas N Greve
Try this one ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats This is for linux. If that is not your system, tell me what your system is doug On 04/13/2015 02:22 PM, Alshikho, Mohamad J. wrote: Hi Doug, Kindly I have the following questions regarding the command

Re: [Freesurfer] mri_segstats flags

2015-04-13 Thread Alshikho, Mohamad J.
...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, April 13, 2015 3:22 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_segstats flags Try this one ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats This is for linux

[Freesurfer] mri_segstats flags

2015-04-13 Thread Alshikho, Mohamad J.
Hi Doug, Kindly I have the following questions regarding the command mri_segstats: * I wanted to use the flag --seg-erode 2 in the command mri_segstats but I am receiving an error message that this flag is not available ( I am using FreeSurfer 5.3.0 ). * When the command

Re: [Freesurfer] mri_segstats flags

2015-04-13 Thread Alshikho, Mohamad J.
To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_segstats flags Are you sure you're using the new version? what do you get if you type which mri_segstats On 04/13/2015 03:41 PM, Alshikho, Mohamad J. wrote: Hi Doug, My system is Linux Centos 7 I tried to run it and I got

Re: [Freesurfer] mri_segstats flags

2015-04-13 Thread Douglas N Greve
...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, April 13, 2015 4:16 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_segstats flags Are you sure you're using the new version? what do you get if you type which mri_segstats On 04/13/2015

Re: [Freesurfer] mri_segstats flags

2015-04-13 Thread Douglas N Greve
...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, April 13, 2015 4:29 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_segstats flags maybe zeke can help you sort it out On 04/13/2015 04:24 PM, Alshikho, Mohamad J. wrote: I got

Re: [Freesurfer] mri_segstats flags

2015-04-13 Thread Alshikho, Mohamad J.
? From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, April 13, 2015 4:29 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_segstats flags

Re: [Freesurfer] mri_segstats flags

2015-04-13 Thread Alshikho, Mohamad J.
...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, April 13, 2015 4:52 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_segstats flags Only the structures in the color table (--ctab) are reported; the 1st ctab

Re: [Freesurfer] mri_segstats flags

2015-04-13 Thread Douglas N Greve
Subject: Re: [Freesurfer] mri_segstats flags Try this one ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats This is for linux. If that is not your system, tell me what your system is doug On 04/13/2015 02:22 PM, Alshikho, Mohamad J. wrote: Hi Doug, Kindly I have