Hi,
If the surfaces are 'done' and we update/edit the the aseg.mgz with
recon-all -surfsegedit
and then run recon-all -autorecon2-cp -autorecon3
to update the .stats, this also creates new wm and pial surfaces that may be
different to those used for -surfsegedit. Is that right?
As another
Hi,
This is a repost, hope someone can please comment?
Thanks.
On Wed, 06 May 2015 00:07:17 -0700 prasser lt;pras...@zoho.comgt; wrote
Thanks Martin. The concern I have with using -autorecon2-cp -autorecon3 after
-surfsegedit is that, new surfaces are created during
Thanks Martin. The concern I have with using -autorecon2-cp -autorecon3 after
-surfsegedit is that, new surfaces are created during -autorecon2-cp
-autorecon3 so that aseg and the surfaces are always out of step with each
other.
Any suggestions on how I could test the validity of the method
Yes,
if this is in the long, you also need to add the -long …. stuff
Martin
On Apr 28, 2015, at 12:46 AM, prasser pras...@zoho.com wrote:
Thanks for your response, not sure if I've quite got it yet.
So, after the surfaces are done and we update/edit the the aseg.mgz with say,
I would think autorecon2-cp autorecon3 would be fine, but maybe Martin can
comment?
On Wed, 22 Apr 2015, prasser
wrote:
Repost.Thanks.
On Mon, 20 Apr 2015 16:35:29 -0700 pras...@zoho.com wrote
Thank you again for your reply.
For editing aseg.mgz, as mentioned in
Repost.Thanks.
On Mon, 20 Apr 2015 16:35:29 -0700 lt;pras...@zoho.comgt; wrote
Thank you again for your reply.
For editing aseg.mgz, as mentioned in
https://surfer.nmr.mgh.harvard.edu/fswiki/TkMeditGuide/TkMeditWorkingWithData/FreeviewSegmentations
it does suggest using
Hi
so take a look at
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TroubleshootingData
where the entry points are described ( for brainmask and finalsurfs
-autorecon-pial should be OK, for aseg it says to use
-autorecon2-noaseg )
Also this page
Thank you again for your reply.
For editing aseg.mgz, as mentioned in
https://surfer.nmr.mgh.harvard.edu/fswiki/TkMeditGuide/TkMeditWorkingWithData/FreeviewSegmentations
it does suggest using -autorecon2-noaseg, but from what I can see this does
not update the aparc+aseg.mgz and associated
Hi P,
usually edits to surfaces should not be required in the long. The
surfaces there get initialized from the base, so you need to make sure
the base surface is as accurate as possible. Several edits also get
transferred automatically from the cross sectional runs. See this
