Hello, Perhaps you will be happy to have some feed-back on the fsa-20020724 version. (using csurf : I dont know the command line, lack of doc).
tkmedit works pretty well, tksurfer doesn't want to display anything, but give the messages : env tksurferinterface=csurf patchname=occip.patch.flat /fmri/apps/fsa-20020724/bin/Linux/tksurfer -Lambik lh inflated -tcl /tmp/TmpTclSurf.17194 ltMNIread: could not open file /Malta1/freesurfer/Subjects/Lambik/mri/transforms/talairach.xfm No such file or directory Reading /fmri/apps/fsa-20020724/lib/tcl/tkm_wrappers.tcl Successfully parsed tksurfer.tcl (I dont use the talairach's, but it's not the pb I suppose). "view functionnal data" works more or less, but no activity is displayed on the flat patch -successfully loaded. the pb comes mainly that no interface is given, so no action can be done to load stats. it gives : /fmri/apps/fsa-20020724/bin/Linux/tksurfer -Lambik lh inflated -o /fmri/apps/fsa-20020724/sessions/LambikNRretinotopy/image/lambik353637_nr_hor-ver_uncorr /fmri/apps/fsa-20020724/sessions/LambikNRretinotopy/image/lambik353637_nr_hor-ver_uncorr -fthresh 0 -fslope 0.3 -fmid 0.5 -truncphaseflag 0 -invphaseflag 0 -scalebarflag 1 -colscalebarflag 1 -patch occip.patch.flat setting fthresh to 0.0000 setting fslope to 0.3000 setting fmid to 0.5000 setting truncphaseflag to 0 setting invphaseflag to 0 setting scalebarflag to 1 setting colscalebarflag to 1 displaying patch occip.patch.flat... ltMNIread: could not open file /Malta1/freesurfer/Subjects/Lambik/mri/transforms/talairach.xfm No such file or directory MRISreadValues: File /fmri/apps/fsa-20020724/sessions/LambikNRretinotopy/image/lambik353637_nr_hor-ver_uncorr//fmri/apps/fsa-20020724/sessions/LambikNRretinotopy/image/lambik353637_nr_hor-ver_uncorr.w not found No such file or directory surfer: current subjects dir: /Malta1/freesurfer/Subjects surfer: in new (APD2) format "scripts" dir surfer: session root data dir ($session) set to: surfer: /Malta1/freesurfer/Sessions/LambikNRretinotopy/image surfer: /Malta1/freesurfer/Subjects/Lambik/mri/T1/COR-.info surfer: Talairach xform file not found (ignored) surfer: vertices=17708, faces=35420 surfer: ### File /fmri/apps/fsa-20020724/sessions/LambikNRretinotopy/image/lambik353637_nr_hor-ver_uncorr//fmri/apps/fsa-20020724/sessions/LambikNRretinotopy/image/lambik353637_nr_hor-ver_uncorr could not be opened. surfer: curvature read: min=-0.730000 max=0.570000 Reading /fmri/apps/fsa-20020724/lib/tcl/tkm_wrappers.tcl Successfully parsed tksurfer.tcl So folder pb, plus the -lh.w and -rh.w are missing in the script. I'm working a linux RH7.2 release. the freesurfer-alpha release works, and the older version 33i with radiobuttons pretty well. Denis
