On 03/09/2012 01:04 AM, Huayan Gao wrote:
Dear Hans,
I emptied cache and it is not showing up the changes. I changed a computer and
tried again. No luck.
Yes, I killed the process and restart the server, no luck.
It should be pretty straight forward but it just did not come out as I
Hi everyone. I'm writing a tool that can take a parameter with a dynamic list
of values.
The tool XML file looks like this:
conditional ...
param name=outer type=select
option value=1XYZ/option
option value=2ZYX/option
option value=3ZXY/option
/param
when value=1
Hello,
In a Galaxy tool, I would like to display a pre-completed path in the
xml inputbox, inside the tool.xml file.
Consequently, I would like to add a variable in an param value= /
tag , like this :
tool id=test name=test version=
command interpreter=shtest.sh $in $out/command
inputs
Hi everyone. I've set up a galaxy production environment and it seems to be
working.
I've identified a couple of issues though:
If I enable apache_xsendfile, the little eye icon (Display data in browser)
on each dataset stops working. I get the following instead:
The requested URL
Hi,
thanks for the answer. I have one more question. Is there one main
table (in the database), which creates one key for one job and this key
is allocated over other tables?
Thank you!
Best,
Christin
Am 08.03.2012 16:40, schrieb Björn Grüning:
Hi Christin,
I would like to clarify
Yes, see the table 'job'. You may or may not find this helpful, but here's a
big database schema from our wiki:
http://wiki.g2.bx.psu.edu/DataModel?action=AttachFiledo=viewtarget=galaxy_schema.png
-Dannon
On Mar 9, 2012, at 8:00 AM, christin weinberg wrote:
Hi,
thanks for the answer. I
Dear all,
I have spent several days trying to make get microbial data to work in my
local Galaxy instance, but failed.
What i did is:
1. cd /galaxy-dist/tool-data/
2. nano microbial_data
3. uncomment the lines starting with ORG, CHR or DATA
After that, i restarted Galaxy and can see the options
I'm getting this error when I try to install the NGS Java toolkit toolshed...Version information for the tools included in the java_genomics_toolkit
repository is missing. Reset all of this repository's metadata in the
tool shed, then set the installed tool versions from the installed
