Re: [galaxy-dev] DRMAA runner weirdness

2013-01-11 Thread Liisa Koski
. So I am afraid to update our production instance. Thanks in advance, Liisa From: Kyle Ellrott kellr...@soe.ucsc.edu To: Nate Coraor n...@bx.psu.edu Cc: galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu Date: 10/01/2013 07:44 PM Subject:Re: [galaxy-dev] DRMAA runner

[galaxy-dev] DRMAA runner weirdness

2013-01-08 Thread Kyle Ellrott
I'm running a test Galaxy system on a cluster (merged galaxy-dist on Janurary 4th). And I've noticed some odd behavior from the DRMAA job runner. I'm running a multithread system, one web server, one job_manager, and three job_handlers. DRMAA is the default job runner (the command for tophat2 is