Hi Hans,
Here is my XML file in a simplificated version (no conditionnal
parameters) , -i -r and -k are the mandatory arguments of my tool,
written in C++:
tool id=myTool name=myTool
description the description /description
command interpreter=C++
Marine,
I think that xml instructs Galaxy to write a command line like:
C++ /home/myName/work/galaxy-dist/tools/NGStools/myTool
Perhaps try removing 'interpreter=C++' from the command tag - then
Galaxy will use:
/home/myName/work/galaxy-dist/tools/NGStools/myTool .
which is probably
Hi Marine
In addition to Ross' comment earlier, there are a few points in the xml
I think they are wrong or at least I would code them differently - see
my comments in between your text below
On 05/30/2012 12:32 PM, Marine Rohmer wrote:
Hi Hans,
Here is my XML file in a simplificated
