Hi everyone,
I'm trying with all my best to add an NGS tool into my local Galaxy instance.
I've added my tool in tool_conf.xml, and made a XML file with all the
command, param etc... I think it's pretty ok, and everything is correctly
displayed on the Galaxy interface.
However, when I
Hi Marine
Could you please provide the tool definition xml file. Otherwise it is
going to be difficult to guess, what is going wrong
Regards, Hans
On 05/30/2012 11:10 AM, Marine Rohmer wrote:
Hi everyone,
I'm trying with all my best to add an NGS tool into my local Galaxy
instance.
I've
Hi Hans,
Here is my XML file in a simplificated version (no conditionnal
parameters) , -i -r and -k are the mandatory arguments of my tool,
written in C++:
tool id=myTool name=myTool
description the description /description
command interpreter=C++
Marine,
I think that xml instructs Galaxy to write a command line like:
C++ /home/myName/work/galaxy-dist/tools/NGStools/myTool
Perhaps try removing 'interpreter=C++' from the command tag - then
Galaxy will use:
/home/myName/work/galaxy-dist/tools/NGStools/myTool .
which is probably
Hi Marine
In addition to Ross' comment earlier, there are a few points in the xml
I think they are wrong or at least I would code them differently - see
my comments in between your text below
On 05/30/2012 12:32 PM, Marine Rohmer wrote:
Hi Hans,
Here is my XML file in a simplificated
Hello Bjoern,
This should be resolved in change set 7211:16a93eb6eaf6, which is available
from our central repository. Thanks for reporting this, and please let me know
if you encounter additional issues.
Greg Von Kuster
On May 26, 2012, at 10:51 AM, Björn Grüning wrote:
Hi,
has anyone
Ok, when I remove interpreter = C++ from command, and keep it empty or
write interpreter = bash instead, I have no more this error message. Galaxy
says The following job has been successfully added to the queue,and I can
show its progression on the history.
Thank you Ross !
But now I have a
Hi,I am trying to run MEME and I got this error below when running it.Is this an error complaining about the non-ASCII nature of the OUTPUT or of the program (or input?).ThanksThonError Traceback:View as: Interactive | Text | XML (full)⇝ UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in
