Hi John,
Yes, I think this should work as I have seen it work for another binary type I
made before. See below:
class FileSet( Binary ):
FileSet containing N files
file_ext = prims.fileset.zip
blurb = (zipped) FileSet containing multiple files
def sniff( self, filename ):
Hi,
I have a Bioconductor package which depends on R 3.1.1 , so I think I cannot
use the setup_r_environment trick.
I already got a tool_dependency.xml working that installs R 3.1.1 and the
necessary Bioconductor packages using bioclite method (see attachment). Now my
question is:
*
Rdata is binary and serialises R objects so I sure hope you don't have to
peek inside - probably needs most of an R environment - like rpy or
something.
A binary header signature magic number would be ideal - I checked a few
saved rdata files lying around here and all seemed to start with the
Hi Pieter,
Am 30.10.2014 um 11:15 schrieb Lukasse, Pieter:
Hi,
I have a Bioconductor package which depends on R 3.1.1 , so I think I cannot
use the setup_r_environment trick.
Why? Do you need a new release? The latest current release in the Tool
Shed is R 3.1.0. If this is not enough we
Hi all,
It seems the ToolShed now uses roles for granting admin rights...
but still has the old Grant authority to make changes feature?
I just hit a possible glitch here - I wanted to create a new repo
under the iuc user, edit the admin settings, then log in as my
normal personal account and
I changed the values for new_file_path and job_working_directory in my config
file.
After restarting galaxy I'm finding some of the tools still reference the old
path which no longer exists. Do these end up hard coded in some place... I
haven't done a find + grep to go looking yet but that
Hello,
I'm working with two custom tools in my local galaxy instance:
The first tool outputs a single aceb file. aceb is a custom datatype I've
added that describes a crop experiment.
The second tool takes three files as inputs, one of which is an aceb file.
I can successfully run these two
